Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NX050_RS10570 Genome accession   NZ_CP103456
Coordinates   1976964..1977584 (-) Length   206 a.a.
NCBI ID   WP_014480105.1    Uniprot ID   A0A0D1KQW4
Organism   Bacillus subtilis strain PN176 (HK176)     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1971964..1982584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX050_RS10550 (NX050_10550) dnaD 1972255..1972953 (+) 699 WP_004398499.1 DNA replication protein DnaD -
  NX050_RS10555 (NX050_10555) nth 1972972..1973631 (+) 660 WP_009967580.1 endonuclease III -
  NX050_RS10560 (NX050_10560) ypoC 1973628..1974122 (+) 495 WP_009967579.1 YpoC family protein -
  NX050_RS10565 (NX050_10565) ponA 1974198..1976942 (-) 2745 WP_004398589.1 transglycosylase domain-containing protein -
  NX050_RS10570 (NX050_10570) recU 1976964..1977584 (-) 621 WP_014480105.1 Holliday junction resolvase RecU Machinery gene
  NX050_RS10575 (NX050_10575) yppC 1977625..1978587 (+) 963 WP_033881326.1 DUF2515 domain-containing protein -
  NX050_RS10580 (NX050_10580) sspM 1978612..1978716 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  NX050_RS10585 (NX050_10585) yppD 1978915..1979160 (+) 246 WP_004398488.1 YppD family protein -
  NX050_RS10590 (NX050_10590) yppE 1979206..1979577 (+) 372 WP_003246080.1 YppE family protein -
  NX050_RS10595 (NX050_10595) yppF 1979616..1979804 (-) 189 WP_003230690.1 YppF family protein -
  NX050_RS10600 (NX050_10600) sppG 1979991..1980368 (+) 378 WP_004398696.1 YppG family protein -
  NX050_RS10605 (NX050_10605) ypqA 1980389..1980808 (-) 420 WP_014480103.1 Hsp20/alpha crystallin family protein -
  NX050_RS10610 (NX050_10610) ptsA 1980946..1981452 (+) 507 WP_029726788.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 24019.18 Da        Isoelectric Point: 9.6240

>NTDB_id=722886 NX050_RS10570 WP_014480105.1 1976964..1977584(-) (recU) [Bacillus subtilis strain PN176 (HK176)]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPIFLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=722886 NX050_RS10570 WP_014480105.1 1976964..1977584(-) (recU) [Bacillus subtilis strain PN176 (HK176)]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTATATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTTTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KQW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.515

100

0.995