Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   OPY27_RS27335 Genome accession   NZ_CP118565
Coordinates   5847252..5847776 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain PA_HN004     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5842252..5852776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPY27_RS27320 (OPY27_27310) aroB 5843368..5844474 (-) 1107 WP_033886361.1 3-dehydroquinate synthase -
  OPY27_RS27325 (OPY27_27315) aroK 5844524..5845042 (-) 519 WP_003095833.1 shikimate kinase AroK -
  OPY27_RS27330 (OPY27_27320) pilQ 5845054..5847198 (-) 2145 WP_003135767.1 type 4a pilus secretin PilQ Machinery gene
  OPY27_RS27335 (OPY27_27325) comL/pilP 5847252..5847776 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  OPY27_RS27340 (OPY27_27330) pilO 5847773..5848396 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  OPY27_RS27345 (OPY27_27335) pilN 5848393..5848989 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  OPY27_RS27350 (OPY27_27340) pilM 5848989..5850053 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  OPY27_RS27355 (OPY27_27345) - 5850238..5852706 (+) 2469 WP_003114576.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=722862 OPY27_RS27335 WP_003095836.1 5847252..5847776(-) (comL/pilP) [Pseudomonas aeruginosa strain PA_HN004]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=722862 OPY27_RS27335 WP_003095836.1 5847252..5847776(-) (comL/pilP) [Pseudomonas aeruginosa strain PA_HN004]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362