Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   OPY27_RS09310 Genome accession   NZ_CP118565
Coordinates   1972137..1972466 (+) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PA_HN004     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1967137..1977466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPY27_RS09295 (OPY27_09295) - 1967837..1968796 (+) 960 WP_004350973.1 SDR family oxidoreductase -
  OPY27_RS09300 (OPY27_09300) - 1968793..1969818 (+) 1026 WP_009313766.1 glycosyltransferase family 4 protein -
  OPY27_RS09305 (OPY27_09305) - 1969949..1971946 (+) 1998 WP_009313767.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  OPY27_RS09310 (OPY27_09310) comEA/comE1 1972137..1972466 (+) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  OPY27_RS09320 (OPY27_09320) - 1972683..1973879 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  OPY27_RS09325 (OPY27_09325) uvrB 1974067..1976079 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=722805 OPY27_RS09310 WP_003091430.1 1972137..1972466(+) (comEA/comE1) [Pseudomonas aeruginosa strain PA_HN004]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=722805 OPY27_RS09310 WP_003091430.1 1972137..1972466(+) (comEA/comE1) [Pseudomonas aeruginosa strain PA_HN004]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGATG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385