Detailed information NTG0722800

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OPY27_RS06910
• Genome accession: NZ_CP118565
• Coordinates: 1462638..1463642 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PA_HN004
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1457638..1468642

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OPY27_RS06880 (OPY27_06880)	fghA	1457730..1458581 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
OPY27_RS06885 (OPY27_06885)	ispF	1458652..1459125 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OPY27_RS06890 (OPY27_06890)	truD	1459122..1460189 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
OPY27_RS06895 (OPY27_06895)	surE	1460177..1460926 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
OPY27_RS06900 (OPY27_06900)	-	1460959..1461594 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
OPY27_RS06905 (OPY27_06905)	-	1461640..1462533 (+)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
OPY27_RS06910 (OPY27_06910)	rpoS	1462638..1463642 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
OPY27_RS06915 (OPY27_06915)	fdxA	1464068..1464391 (-)	324	WP_003092272.1	ferredoxin FdxA	-
OPY27_RS06920 (OPY27_06920)	mutS	1464458..1467025 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
OPY27_RS06925 (OPY27_06925)	-	1467151..1468158 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=722800 OPY27_RS06910 WP_003113871.1 1462638..1463642(+) (rpoS) [Pseudomonas aeruginosa strain PA_HN004]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=722800 OPY27_RS06910 WP_003113871.1 1462638..1463642(+) (rpoS) [Pseudomonas aeruginosa strain PA_HN004]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653