Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NYO12_RS18540 Genome accession   NZ_CP103420
Coordinates   3676552..3677148 (-) Length   198 a.a.
NCBI ID   WP_012542296.1    Uniprot ID   A0A1F2LQD1
Organism   Klebsiella variicola strain KV1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3671552..3682148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYO12_RS18525 (NYO12_18525) helD 3671760..3673814 (-) 2055 WP_259070316.1 DNA helicase IV -
  NYO12_RS18530 (NYO12_18530) - 3673939..3674385 (+) 447 WP_012542294.1 YccF domain-containing protein -
  NYO12_RS18535 (NYO12_18535) yccS 3674403..3676538 (+) 2136 WP_008805895.1 YccS family putative transporter -
  NYO12_RS18540 (NYO12_18540) sxy/tfoX 3676552..3677148 (-) 597 WP_012542296.1 TfoX/Sxy family DNA transformation protein Regulator
  NYO12_RS18545 (NYO12_18545) sulA 3677499..3678008 (+) 510 WP_008805893.1 SOS-induced cell division inhibitor SulA -
  NYO12_RS18550 (NYO12_18550) ompA 3678361..3679413 (+) 1053 WP_008805892.1 porin OmpA -
  NYO12_RS18555 (NYO12_18555) matP 3679524..3679976 (-) 453 WP_008805891.1 macrodomain Ter protein MatP -
  NYO12_RS18560 (NYO12_18560) - 3680162..3681919 (+) 1758 WP_032691146.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22631.12 Da        Isoelectric Point: 10.0610

>NTDB_id=722788 NYO12_RS18540 WP_012542296.1 3676552..3677148(-) (sxy/tfoX) [Klebsiella variicola strain KV1]
MRKLVCPRFPQFQACVSPLGQLHSRPLFGGYSLAIDDTVFAMVAEGDIYLRACEQSAAYRVEHRNPLLTLRRHGRIVPMK
YYQIDDALWRDETQLFRLSLLSWQSAQREKNHRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQQAWQRLRENN
ASLSLNVLLALEGAIVGVHAAALPTLRRQELLEWAGAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=722788 NYO12_RS18540 WP_012542296.1 3676552..3677148(-) (sxy/tfoX) [Klebsiella variicola strain KV1]
ATGAGAAAACTAGTATGTCCGCGGTTCCCGCAATTTCAGGCCTGCGTCTCGCCGCTGGGTCAGTTACATTCTCGTCCGCT
TTTTGGCGGCTATAGCCTGGCCATTGATGATACGGTGTTTGCGATGGTGGCAGAGGGCGATATTTACCTGAGGGCCTGCG
AGCAGAGCGCCGCGTATCGGGTTGAACATCGCAATCCTTTATTAACGCTGCGCCGACATGGGCGCATCGTGCCGATGAAG
TATTATCAAATTGACGACGCATTGTGGCGCGATGAGACTCAGCTTTTTCGGCTGTCGCTGTTGTCGTGGCAGAGTGCGCA
GCGTGAAAAGAACCACCGACGGGCGTCGGGCCGTCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TCCACGCGGGCATACCGGATGTCAGGACGCTTCGGGAGGTAGGCGCTCAGCAGGCCTGGCAACGGCTACGAGAAAACAAC
GCCTCTCTGTCGCTCAACGTCTTGCTGGCGCTGGAGGGGGCGATTGTCGGCGTTCACGCCGCCGCGCTCCCGACGCTGCG
GCGTCAGGAGCTGCTCGAATGGGCTGGAGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1F2LQD1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.761

99.495

0.505