Detailed information NTG0722699

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OPI73_RS06805
• Genome accession: NZ_CP118564
• Coordinates: 1460281..1461285 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa isolate PA_HN008
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1455281..1466285

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OPI73_RS06775 (OPI73_06775)	fghA	1455373..1456224 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
OPI73_RS06780 (OPI73_06780)	ispF	1456295..1456768 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OPI73_RS06785 (OPI73_06785)	truD	1456765..1457832 (+)	1068	WP_014602573.1	tRNA pseudouridine(13) synthase TruD	-
OPI73_RS06790 (OPI73_06790)	surE	1457820..1458569 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
OPI73_RS06795 (OPI73_06795)	-	1458602..1459237 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
OPI73_RS06800 (OPI73_06800)	-	1459283..1460176 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
OPI73_RS06805 (OPI73_06805)	rpoS	1460281..1461285 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
OPI73_RS06810 (OPI73_06810)	fdxA	1461712..1462035 (-)	324	WP_003092272.1	ferredoxin FdxA	-
OPI73_RS06815 (OPI73_06815)	mutS	1462102..1464669 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
OPI73_RS06820 (OPI73_06820)	-	1464795..1465802 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=722699 OPI73_RS06805 WP_003113871.1 1460281..1461285(+) (rpoS) [Pseudomonas aeruginosa isolate PA_HN008]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=722699 OPI73_RS06805 WP_003113871.1 1460281..1461285(+) (rpoS) [Pseudomonas aeruginosa isolate PA_HN008]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653