Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NYF24_RS16170 Genome accession   NZ_CP103401
Coordinates   3439955..3441337 (-) Length   460 a.a.
NCBI ID   WP_258992862.1    Uniprot ID   -
Organism   Pantoea agglomerans strain CHTF15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3434955..3446337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYF24_RS16150 (NYF24_16150) - 3436000..3436377 (-) 378 WP_010253618.1 hypothetical protein -
  NYF24_RS16155 (NYF24_16155) - 3436490..3437386 (-) 897 WP_154209877.1 LysR family transcriptional regulator -
  NYF24_RS16160 (NYF24_16160) - 3437591..3438592 (+) 1002 WP_154209876.1 zinc-binding alcohol dehydrogenase family protein -
  NYF24_RS16165 (NYF24_16165) nadR 3438638..3439879 (-) 1242 WP_010253612.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  NYF24_RS16170 (NYF24_16170) radA 3439955..3441337 (-) 1383 WP_258992862.1 DNA repair protein RadA Machinery gene
  NYF24_RS16175 (NYF24_16175) serB 3441351..3442328 (-) 978 WP_258992863.1 phosphoserine phosphatase -
  NYF24_RS16180 (NYF24_16180) - 3442436..3443086 (+) 651 WP_010253606.1 YtjB family periplasmic protein -
  NYF24_RS16185 (NYF24_16185) yjjG 3443751..3444431 (-) 681 WP_010671712.1 pyrimidine 5'-nucleotidase -
  NYF24_RS16190 (NYF24_16190) rimI 3444450..3444890 (-) 441 WP_010671713.1 ribosomal protein S18-alanine N-acetyltransferase -
  NYF24_RS16195 (NYF24_16195) - 3444862..3445272 (-) 411 WP_022625367.1 DNA polymerase III subunit psi -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49303.93 Da        Isoelectric Point: 7.4220

>NTDB_id=722545 NYF24_RS16170 WP_258992862.1 3439955..3441337(-) (radA) [Pantoea agglomerans strain CHTF15]
MAKAAKRAFVCNECGADYPRWQGQCSACHAWNTITEVRIAASPAAARNERLSGYAGSAGTSRVQKLSEISLEALPRFSTS
FKEFDRVLGGGVVPGSAILIGGSPGAGKSTLLLQVICRLSEGMKTLYVTGEESLQQVAMRAHRLGLPTENVNMLSETSIE
QICLIAEQEQPQLMVIDSIQVMHMAEIQSSPGSVAQVRETAAYLTRFAKTRGVAIIMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGMREVSNPSAIFLSRGEEITSGSSVMVLWEGTRPLLVEIQALVDH
SMMGNPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALMLSMVSSLRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERIAEAAKHGFKRAIVPAGNAPKKPIAGMQVFSAKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=722545 NYF24_RS16170 WP_258992862.1 3439955..3441337(-) (radA) [Pantoea agglomerans strain CHTF15]
TTGGCCAAAGCGGCAAAACGCGCATTTGTCTGTAACGAATGTGGCGCAGATTACCCACGCTGGCAGGGGCAGTGCAGCGC
CTGTCACGCCTGGAACACCATCACCGAGGTGCGCATTGCCGCCTCGCCCGCGGCTGCGCGTAACGAGCGCCTGAGTGGTT
ATGCCGGTAGCGCCGGCACCAGCCGGGTGCAGAAGCTCTCTGAAATCAGCCTGGAGGCGTTACCGCGCTTCTCGACCAGC
TTCAAAGAGTTTGACCGGGTGCTGGGCGGTGGGGTGGTGCCGGGCAGCGCCATTCTGATTGGCGGCAGCCCCGGCGCAGG
CAAATCCACGCTGCTGCTGCAGGTGATCTGCCGGTTGTCAGAGGGGATGAAAACCCTGTATGTCACCGGTGAAGAGTCAC
TGCAGCAGGTGGCGATGCGCGCCCATCGTCTGGGATTACCTACCGAAAATGTGAATATGCTGTCGGAAACCAGCATTGAG
CAGATCTGCCTGATCGCCGAACAGGAGCAGCCGCAACTGATGGTGATCGACTCGATCCAGGTGATGCACATGGCGGAGAT
CCAGTCATCGCCGGGCAGCGTCGCCCAGGTGCGTGAAACCGCCGCTTACCTGACGCGCTTCGCCAAGACGCGCGGCGTGG
CGATCATCATGGTCGGTCACGTCACCAAAGATGGCTCCCTGGCCGGACCGAAAGTACTGGAGCACTGTATCGACTGTTCA
GTGCTGCTGGATGGCGATGCCGATTCCCGCTTCCGCACCCTGCGCAGTCATAAAAACCGCTTCGGCGCGGTTAATGAACT
GGGTGTGTTTGCCATGACCGAGCAGGGCATGCGTGAAGTCAGCAACCCGTCAGCTATTTTCCTGTCGCGCGGCGAAGAGA
TCACCTCGGGCAGTTCGGTGATGGTGCTGTGGGAGGGAACGCGACCGCTGCTGGTGGAGATTCAGGCGCTGGTCGATCAC
TCGATGATGGGCAATCCACGCCGCGTGGCGGTAGGTCTGGAGCAGAACCGCCTGGCGATTCTGCTGGCAGTATTGCACCG
TCACGGCGGATTGCAGATGGCGGATCAGGATGTGTTCGTCAACGTGGTCGGCGGCGTCAAAGTCACCGAAACCAGTGCTG
ACCTGGCGCTGATGCTGTCGATGGTGTCGAGCCTGCGCGATCGTCCGTTACCGCAGGATCTGGTGATCTTCGGCGAAGTG
GGACTGGCGGGCGAAATCCGTCCGGTGCCCAGCGGTCAGGAACGCATCGCTGAAGCGGCGAAGCATGGCTTCAAACGCGC
CATTGTGCCGGCAGGGAATGCACCGAAAAAACCGATTGCCGGGATGCAGGTTTTCAGCGCGAAGAAGCTGGCCGATGCGC
TGGCGATTCTGGACGATCTGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(87-225)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(347-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.373

100

0.485
  radA Streptococcus mitis NCTC 12261

44.82

96.522

0.433
  radA Streptococcus pneumoniae Rx1

45.244

93.696

0.424
  radA Streptococcus pneumoniae D39

45.244

93.696

0.424
  radA Streptococcus pneumoniae R6

45.244

93.696

0.424
  radA Streptococcus pneumoniae TIGR4

45.244

93.696

0.424
  radA Streptococcus mitis SK321

45.244

93.696

0.424