Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   PVE41_RS13225 Genome accession   NZ_CP118438
Coordinates   2754594..2757998 (+) Length   1134 a.a.
NCBI ID   WP_046029153.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 1908-10     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 2749594..2762998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVE41_RS13200 (PVE41_13200) sucC 2749781..2750947 (+) 1167 WP_011078272.1 ADP-forming succinate--CoA ligase subunit beta -
  PVE41_RS13205 (PVE41_13205) sucD 2750947..2751819 (+) 873 WP_011149794.1 succinate--CoA ligase subunit alpha -
  PVE41_RS13210 (PVE41_13210) znuB 2751902..2752687 (-) 786 WP_039553087.1 zinc ABC transporter permease subunit ZnuB -
  PVE41_RS13215 (PVE41_13215) znuC 2752680..2753465 (-) 786 WP_011078269.1 zinc ABC transporter ATP-binding protein ZnuC -
  PVE41_RS13220 (PVE41_13220) znuA 2753547..2754422 (+) 876 WP_282499829.1 zinc ABC transporter substrate-binding protein ZnuA -
  PVE41_RS13225 (PVE41_13225) tfoS 2754594..2757998 (+) 3405 WP_046029153.1 AraC family transcriptional regulator Regulator
  PVE41_RS13230 (PVE41_13230) - 2758785..2759012 (+) 228 WP_011149798.1 FeoA family protein -
  PVE41_RS13235 (PVE41_13235) feoB 2759012..2761288 (+) 2277 WP_225508374.1 Fe(2+) transporter permease subunit FeoB -
  PVE41_RS13240 (PVE41_13240) - 2761285..2761515 (+) 231 WP_011078264.1 FeoC-like transcriptional regulator -
  PVE41_RS13245 (PVE41_13245) - 2761624..2762052 (-) 429 WP_011078263.1 HIT domain-containing protein -

Sequence

Protein


Download         Length: 1134 a.a.        Molecular weight: 126566.18 Da        Isoelectric Point: 5.2731

>NTDB_id=722414 PVE41_RS13225 WP_046029153.1 2754594..2757998(+) (tfoS) [Vibrio vulnificus strain 1908-10]
MLRILAWLLLAGLTLPFKALALDGNSAIFYPLPGQEQGTFVAAKNLFVGGDGGLWIHDVHGKVQYFDGNTLLPKRGSLLE
YPSEQVAFHQGSFWTFVANEVFQTYPNQKRQLAFSLNPGAEIRKIGSSDGHIWVSDGINFYDYDIESKELKTYSLLSLYQ
NNQSSYVYINDAKRVLSKWVLGTTSGAYLSQGEQFTHIKASAKHFVAKLYFSPTRRELLVGTLNGAALIDILKPTQKNIM
IGESHVLSMTETNQEYWIGTEHGLYSYSFLTGQVAKVKAAGAQDVSPDNRKIYSLVNDEQGGIWVATNSGILYYSLFGRK
FERLNNITEEKASRFNGNITKIVYASDETIWFKDANNLYRAIGVNKQYSRVRLPVKVNDFALEDGNIWIASEQGLYIYDT
NQYKLRSFDLPSYLKGKEIDFVSVSPQGKVWISSGYRLAAIGVADGRFQDYGDRWIASQNLPARILGLEVDQKVPLIVRT
DHGAYVLENDKIRFERNTQSFGESVDIAEAKDGSLWFAGTHGIYRKDPTEKTLGELALPQENVKPICLVTDASGIWMVSS
IGLSFYNFDGELRKHFGSRSGIMSNEFVEGACAASFGEAQSGSVLVLGSKYGLVFADRDDLMVSKLPEPRVVISQVRIDD
QVANIGQKEWQLPELAYGSAISFGLGVMPNAYGETLYYRLNQEHWQTTEAGQVSFEHLAAGDYLLSVKTSLVAGDSVQVR
FTVLHPWYQTTMAMAIFVLLIVALGGLVVFWRSRYVSVQNRELTALVALKTNQLRHQSRVLLTSNQQLRKQIQVRNLLVD
NVARSLRQSVDALLSKPSVEPASEYQEHQMRIAMLLEELKSSPSDGIDGYLQNFNVSHIIQSVVDVWEDELNKSGVQVHI
SGESDDYRVAVGQFNLDVIFNSVFASVLKRAYRGQMLDIVIREQNDFVEVSFIDFGQPFSTSTEAEDSAGVEPAKVDTAI
EKLPALVEQSGGRLSLFSSAERNKIEILWPKAVESLINDEEPSVFVDSVDPSPVTELSPEGAPSPEQLWLAKVEAMVAEH
YTNPEFGTAMAAKMLYVSERSLQRRFKSASSRTFTDYLTEVRLEKACESLLAGEKVVDVAFASGFNDPSYFSQRFKLYFG
VPPSKFASDALESE

Nucleotide


Download         Length: 3405 bp        

>NTDB_id=722414 PVE41_RS13225 WP_046029153.1 2754594..2757998(+) (tfoS) [Vibrio vulnificus strain 1908-10]
TTGCTGCGTATTCTTGCCTGGCTTCTACTCGCTGGGCTTACACTACCGTTCAAAGCGCTAGCTTTGGACGGAAACTCTGC
CATATTTTACCCACTGCCTGGACAGGAGCAGGGAACCTTTGTTGCCGCTAAAAATCTCTTTGTTGGCGGTGATGGTGGTT
TATGGATACATGACGTGCACGGCAAAGTGCAATATTTCGATGGCAATACCTTGTTGCCGAAACGTGGCAGCCTTCTAGAG
TATCCTTCCGAGCAAGTGGCCTTTCACCAAGGCAGTTTTTGGACTTTTGTCGCGAACGAAGTCTTCCAAACGTACCCCAA
TCAGAAACGTCAGTTAGCGTTTAGCTTAAACCCAGGGGCAGAAATCAGAAAAATTGGCAGCTCAGATGGCCACATTTGGG
TGAGTGATGGCATCAATTTTTATGACTACGATATTGAATCAAAAGAATTAAAAACCTATTCCTTACTCTCGTTGTATCAA
AACAATCAGAGTAGTTACGTCTACATCAATGATGCAAAGCGGGTTTTAAGCAAATGGGTACTCGGTACCACATCGGGAGC
GTACCTATCACAAGGTGAGCAATTTACCCATATCAAAGCGTCAGCGAAGCATTTCGTTGCCAAACTGTACTTTTCTCCGA
CTCGTCGTGAGTTACTGGTGGGGACGCTAAATGGCGCTGCGCTCATTGATATTTTAAAGCCGACTCAAAAAAACATCATG
ATTGGAGAGTCTCATGTGCTTTCGATGACAGAAACCAATCAAGAATATTGGATTGGCACGGAACATGGTCTGTACAGTTA
CTCGTTTTTAACTGGACAAGTGGCCAAAGTGAAAGCGGCAGGTGCGCAAGATGTCTCTCCTGATAATCGAAAAATTTACT
CGTTGGTGAATGATGAACAAGGGGGTATTTGGGTTGCGACGAACAGTGGCATTCTCTACTACTCTCTGTTTGGCCGAAAA
TTTGAACGTCTTAATAACATCACCGAAGAAAAAGCCAGCCGTTTTAATGGCAATATCACCAAAATTGTCTATGCATCAGA
TGAAACGATTTGGTTTAAAGATGCAAACAATCTTTACCGGGCCATTGGGGTTAATAAACAATACAGCCGCGTGCGTTTGC
CGGTAAAGGTGAATGACTTTGCACTTGAAGATGGCAACATCTGGATTGCTTCCGAGCAAGGTCTGTATATATACGACACG
AATCAGTACAAACTTCGATCGTTCGATTTACCAAGTTACCTTAAAGGTAAAGAGATTGATTTTGTTTCGGTCAGCCCTCA
AGGCAAGGTTTGGATAAGTTCGGGTTATCGATTAGCTGCCATTGGCGTTGCCGATGGGCGCTTCCAAGATTATGGCGATC
GGTGGATTGCCAGCCAAAATTTGCCCGCTCGAATTTTGGGTCTAGAAGTGGATCAAAAAGTCCCGTTAATCGTAAGAACC
GATCACGGGGCCTATGTGCTAGAAAACGACAAGATCCGTTTTGAGCGAAACACGCAGTCTTTTGGTGAAAGTGTCGATAT
TGCAGAAGCGAAAGATGGGTCGCTATGGTTTGCAGGGACTCACGGCATCTATCGTAAAGATCCCACAGAAAAAACGTTAG
GAGAGCTGGCACTTCCTCAGGAAAACGTGAAGCCTATTTGCTTAGTCACCGATGCTAGCGGCATTTGGATGGTGAGTTCA
ATTGGTCTCAGTTTTTACAATTTTGACGGAGAGCTGCGTAAGCACTTTGGGTCTCGTTCGGGCATTATGAGTAATGAGTT
CGTTGAAGGGGCATGTGCGGCTTCATTTGGAGAAGCGCAATCCGGCTCGGTGTTAGTACTGGGTTCAAAATATGGCCTGG
TATTTGCGGACCGTGATGACCTAATGGTATCCAAACTACCTGAACCTAGAGTGGTCATCAGCCAAGTTCGTATTGATGAT
CAGGTTGCAAATATCGGGCAAAAAGAGTGGCAATTGCCCGAGTTAGCGTATGGTTCCGCGATTAGTTTTGGCCTCGGCGT
GATGCCCAATGCTTACGGTGAAACGCTCTATTACCGTTTAAACCAGGAACACTGGCAAACCACAGAAGCAGGACAAGTCT
CTTTTGAACACCTTGCGGCAGGTGATTACTTGTTAAGTGTTAAAACCAGCCTAGTCGCAGGGGATTCCGTGCAAGTTCGC
TTTACGGTGTTACACCCGTGGTATCAAACTACGATGGCGATGGCAATTTTTGTCTTGCTTATCGTAGCGCTGGGCGGCTT
AGTTGTTTTCTGGCGTTCTCGCTACGTCAGTGTTCAAAACCGTGAGTTAACGGCACTGGTGGCATTGAAGACCAATCAAT
TGCGTCATCAGAGTCGAGTGTTGCTCACCAGTAACCAACAACTTCGTAAACAGATCCAAGTTAGAAATTTGCTGGTTGAC
AATGTTGCCCGTTCATTACGTCAAAGTGTGGATGCATTACTAAGCAAGCCATCGGTTGAACCTGCTTCAGAATATCAGGA
ACATCAAATGCGCATAGCAATGCTTTTGGAAGAGCTAAAAAGCTCGCCCAGCGATGGAATTGACGGGTATCTGCAAAACT
TTAACGTTAGCCATATCATTCAGTCGGTCGTTGACGTTTGGGAAGATGAACTCAATAAAAGCGGTGTTCAGGTGCACATT
TCTGGCGAATCGGACGACTATCGTGTCGCGGTAGGGCAATTTAATCTGGATGTCATTTTTAATAGTGTTTTTGCAAGTGT
GTTGAAACGCGCCTATCGTGGCCAAATGCTCGATATTGTGATCAGAGAGCAAAACGATTTTGTTGAAGTGTCGTTTATTG
ATTTTGGCCAGCCGTTTAGTACGAGCACGGAAGCCGAGGATAGCGCTGGTGTTGAGCCTGCAAAAGTCGATACTGCAATT
GAGAAGCTACCTGCTTTAGTCGAACAAAGTGGCGGACGCTTAAGCTTGTTCAGTAGCGCTGAGCGAAACAAGATCGAAAT
ACTGTGGCCGAAAGCGGTTGAGTCTCTGATAAATGACGAAGAGCCAAGCGTTTTTGTTGATTCAGTCGATCCCTCTCCAG
TTACGGAACTTTCACCCGAAGGCGCTCCATCGCCAGAGCAGTTGTGGCTGGCGAAGGTCGAGGCTATGGTGGCAGAGCAT
TATACAAACCCAGAATTTGGCACGGCAATGGCGGCCAAGATGCTCTATGTTTCTGAGCGCAGCCTACAGAGACGGTTTAA
ATCAGCGAGCTCTCGTACATTTACGGATTACCTCACCGAAGTTCGTTTAGAAAAAGCATGCGAAAGTTTGTTGGCTGGTG
AAAAAGTGGTTGATGTGGCTTTCGCATCGGGATTTAACGATCCTTCCTATTTTAGTCAACGTTTTAAACTGTACTTTGGC
GTGCCCCCTTCAAAATTTGCCAGTGACGCTCTAGAGTCCGAATAA

Domains

Predicted by InterProScan.

Helix-turn-helix domain (HTH_18)

(1052-1126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

39.598

100

0.399