Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   PVE41_RS09360 Genome accession   NZ_CP118438
Coordinates   1933720..1935555 (+) Length   611 a.a.
NCBI ID   WP_282499691.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 1908-10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1928720..1940555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVE41_RS09345 (PVE41_09345) - 1930994..1931665 (-) 672 WP_011078995.1 LysE family translocator -
  PVE41_RS09350 (PVE41_09350) - 1931753..1932550 (-) 798 WP_193387259.1 AraC family transcriptional regulator -
  PVE41_RS09355 (PVE41_09355) rarD 1932624..1933538 (-) 915 WP_108694939.1 EamA family transporter RarD -
  PVE41_RS09360 (PVE41_09360) recQ 1933720..1935555 (+) 1836 WP_282499691.1 ATP-dependent DNA helicase RecQ Machinery gene
  PVE41_RS09365 (PVE41_09365) - 1935548..1935862 (+) 315 WP_039554978.1 DUF3630 family protein -
  PVE41_RS09370 (PVE41_09370) - 1936140..1936811 (+) 672 WP_045618368.1 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter -
  PVE41_RS09375 (PVE41_09375) - 1936908..1937417 (+) 510 WP_015728172.1 helix-turn-helix domain-containing protein -
  PVE41_RS09380 (PVE41_09380) - 1937399..1938256 (+) 858 Protein_1759 IS3 family transposase -
  PVE41_RS09385 (PVE41_09385) gppA 1938321..1939814 (-) 1494 WP_011078989.1 guanosine-5'-triphosphate,3'-diphosphate diphosphatase -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 68976.01 Da        Isoelectric Point: 7.0738

>NTDB_id=722396 PVE41_RS09360 WP_282499691.1 1933720..1935555(+) (recQ) [Vibrio vulnificus strain 1908-10]
MTSTLLADPSDASITPQSVLSQVFGYQTFREGQQSVIEAAVEGKDSLVIMPTGGGKSLCYQIPALVRSGITLVISPLISL
MKDQVDQLKANGVAAECVNSTLSRDALLSVYNRMHAGQLKLVYVSPERVLMRDFIERLENLPLAMIAVDEAHCISQWGHD
FRPEYAALGQLKHHFPHVPFMALTATADDATRKDILSRLHLNEPHVYLGSFDRPNIRYDLVEKHKPVSQVIRYLESQKGN
CGIIYCGSRKKVEMLTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMGINKPNVRFVVHFDIPRNI
ESYYQETGRAGRDGLPAEAMMLYDPADITWLRRMLDEKDDGPQKQVESHKLNAMSAFAEAQTCRRQVLLNYFGEYREKPC
GNCDICLDPPKHFDATVEARKALSCVYRVNQSFGMGYVVEVLRGMQNIRIREHGHDKISTYGLGRDHSHDYWVSIFRQLI
HKGLLFQNITRNSTLQLTEEARPLLRGDMTLELAVPRLDTAARSAKADKLSNKHYDKKLFAKLRKLRKSIADEEEIPPYV
VFSDATLIDMAEILPTSYGEMLAVSGVGQRKLEKYADPFLDLIQEHITHYG

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=722396 PVE41_RS09360 WP_282499691.1 1933720..1935555(+) (recQ) [Vibrio vulnificus strain 1908-10]
ATGACTTCCACGCTGCTTGCCGACCCTTCCGATGCCTCGATAACGCCCCAAAGCGTCTTATCACAGGTGTTCGGCTATCA
GACCTTCCGTGAGGGGCAGCAGTCGGTGATCGAGGCGGCTGTTGAGGGAAAAGATAGTTTGGTGATCATGCCCACCGGTG
GCGGTAAATCGCTGTGCTATCAAATTCCTGCTCTGGTGCGTTCGGGCATTACTTTAGTGATCTCCCCTTTGATTTCGCTG
ATGAAAGATCAGGTTGACCAACTTAAAGCCAACGGTGTGGCGGCAGAATGTGTCAACTCGACCTTATCACGTGACGCTTT
GCTCAGCGTCTACAACCGCATGCACGCGGGACAGCTCAAATTGGTGTACGTTTCGCCAGAGCGGGTGTTGATGCGCGATT
TTATTGAACGGCTGGAAAATTTGCCCCTGGCGATGATTGCTGTCGATGAAGCGCACTGTATCTCTCAGTGGGGACACGAT
TTCCGCCCCGAGTACGCCGCGTTAGGGCAATTGAAGCATCATTTTCCTCACGTGCCGTTTATGGCGTTAACGGCCACGGC
AGACGACGCGACGCGCAAAGACATTTTAAGTCGCTTGCATCTTAATGAGCCTCACGTGTATCTCGGCAGTTTTGATCGCC
CCAACATTCGCTATGACCTAGTGGAGAAGCACAAGCCGGTCTCTCAAGTGATTCGCTATTTGGAAAGCCAAAAAGGCAAT
TGCGGCATTATTTATTGTGGTAGCCGTAAGAAAGTCGAAATGCTGACCGAGAAACTGTGCAATAACCATATTCGAGCAGC
GGGTTATCACGCGGGAATGGACGCGGATGAGCGCGCTTACGTGCAAGAAGCGTTTCAACGAGATGACATCCAAATCGTCG
TGGCGACAGTGGCCTTTGGTATGGGGATCAACAAACCCAATGTGCGCTTTGTGGTGCATTTCGATATTCCACGCAATATC
GAATCATACTACCAAGAAACAGGCAGAGCAGGGCGTGATGGCCTGCCCGCGGAAGCGATGATGCTCTACGATCCGGCAGA
CATCACTTGGTTGCGCCGTATGTTGGATGAGAAAGACGATGGCCCGCAAAAACAAGTGGAAAGTCATAAGCTCAATGCCA
TGAGTGCCTTTGCTGAGGCGCAAACTTGTCGTCGCCAAGTGCTGCTGAACTATTTTGGTGAATACCGCGAGAAGCCTTGC
GGCAATTGCGATATTTGCTTAGATCCGCCGAAGCATTTTGATGCGACGGTAGAAGCACGCAAAGCGTTGTCGTGTGTTTA
TCGCGTTAATCAGAGTTTTGGTATGGGCTACGTAGTGGAAGTGTTGCGCGGGATGCAAAACATTCGTATCCGGGAACATG
GCCACGATAAGATTTCGACCTACGGTTTAGGGCGCGACCACAGCCATGACTATTGGGTGAGCATTTTCCGCCAACTGATC
CACAAAGGGCTGCTGTTTCAAAACATCACCCGCAACTCAACCTTGCAGTTAACCGAAGAAGCAAGGCCATTGCTGCGTGG
TGATATGACGTTGGAGCTGGCGGTGCCACGTTTGGATACTGCCGCGCGCAGTGCCAAAGCAGATAAGCTATCGAACAAAC
ATTACGACAAAAAGCTGTTCGCCAAATTGCGTAAGCTACGCAAATCGATTGCCGATGAGGAAGAGATCCCACCCTATGTG
GTGTTCAGTGATGCCACGCTGATCGACATGGCTGAAATATTGCCGACCTCATATGGTGAAATGCTCGCGGTGAGCGGCGT
CGGGCAGCGCAAACTAGAAAAATACGCGGATCCGTTTTTAGATTTGATTCAGGAGCACATCACTCATTATGGATGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(229-333)

RecQ zinc-binding (RecQ_Zn_bind)

(346-407)

HRDC domain (HRDC)

(537-603)

RQC domain (RQC)

(409-517)

DEAD/DEAH box helicase (DEAD)

(32-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.527

96.89

0.383