Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   PVE41_RS07345 Genome accession   NZ_CP118438
Coordinates   1523672..1525876 (+) Length   734 a.a.
NCBI ID   WP_026130594.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 1908-10     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1518672..1530876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVE41_RS07325 (PVE41_07325) - 1519833..1520999 (-) 1167 WP_060530650.1 O-succinylhomoserine (thiol)-lyase -
  PVE41_RS07330 (PVE41_07330) metJ 1521211..1521528 (+) 318 WP_011079338.1 met regulon transcriptional regulator MetJ -
  PVE41_RS07335 (PVE41_07335) - 1521615..1522892 (-) 1278 WP_011079337.1 malic enzyme-like NAD(P)-binding protein -
  PVE41_RS07340 (PVE41_07340) rpmE 1523170..1523391 (-) 222 WP_011079336.1 50S ribosomal protein L31 -
  PVE41_RS07345 (PVE41_07345) priA 1523672..1525876 (+) 2205 WP_026130594.1 primosomal protein N' Machinery gene
  PVE41_RS07350 (PVE41_07350) cytR 1526105..1527112 (+) 1008 WP_011079334.1 DNA-binding transcriptional regulator CytR Regulator
  PVE41_RS07355 (PVE41_07355) - 1527222..1527779 (+) 558 WP_011151294.1 SPOR domain-containing protein -
  PVE41_RS07360 (PVE41_07360) hslV 1527931..1528485 (+) 555 WP_011079332.1 ATP-dependent protease subunit HslV -
  PVE41_RS07365 (PVE41_07365) hslU 1528513..1529844 (+) 1332 WP_058645415.1 HslU--HslV peptidase ATPase subunit -

Sequence

Protein


Download         Length: 734 a.a.        Molecular weight: 81943.51 Da        Isoelectric Point: 8.5813

>NTDB_id=722384 PVE41_RS07345 WP_026130594.1 1523672..1525876(+) (priA) [Vibrio vulnificus strain 1908-10]
MRPSIARVALPVPLDKQFDYLVPGHLFPIIGGRVSVPFGRQTLIGIVTALVQESDFPREQLKPIKAVLDHRPIWPDSVYS
LLLWCSHFYQHPLGETLHNALPAALRKGKAADFATLQEWQLTELGKNQLMQGLNSRAIKQAKVLNMLANGPLPHQAFLDE
EVASTTLRTLEEKGWISCEEKTPQLARWGNPIEHPVDKPKLNQEQAIAISTVNSQTDFGCYLLEGVTGSGKTEVYLNLIK
PILEQGKQALVLVPEIGLTPQTINRFRQRFDVPVAVIHSGLNDTERLNAWLSARDKAAGIVIGTRSALLIPFAQLGIIIV
DEEHDASYKQQDSLRYHARDVAVMRAAKEGIPIVLGSATPALETLHNALTGKYHHLSLTQRAGVAVPTTNKVLDVKGLYL
ESGLSAPLIAEMRRHLKAGNQVMLFLNRRGFSPALMCHECGWIAECKRCDAYYTYHQYSNEIRCHHCGSQQPIIHQCQGC
GSTQLVTVGVGTEQLENQLTALFPDYKAIRIDRDSTRRKGSLESALEAIRKGEYQILIGTQMLAKGHHFPDVTLVALLDV
DGSLYSSDFRASERLAQLFIQVAGRAGRASKPGEVILQTHHPEHTLLKALLTKDYRHFAQSALEERKIAQLPPFSFLTLF
RAEANHSEIVETFLRQVRMTLESHPLFDHTCLVLGPTPAPLAKRAGKYRWQLLLQTQHRSLMQKILSSTKPAIDLLPDAK
KVRWNLDIEPQDLS

Nucleotide


Download         Length: 2205 bp        

>NTDB_id=722384 PVE41_RS07345 WP_026130594.1 1523672..1525876(+) (priA) [Vibrio vulnificus strain 1908-10]
ATGCGTCCATCCATTGCTCGTGTTGCGCTGCCAGTGCCACTCGATAAACAATTTGATTATCTCGTTCCTGGACACCTTTT
TCCGATCATTGGTGGCCGCGTGAGTGTGCCATTTGGACGACAAACCTTGATTGGCATTGTCACCGCTTTGGTTCAAGAAT
CAGACTTTCCACGCGAGCAACTTAAACCCATTAAAGCGGTGTTGGATCATCGTCCTATTTGGCCCGATTCCGTCTACAGT
TTATTACTTTGGTGTAGCCACTTTTACCAACATCCCCTAGGTGAAACACTGCATAACGCCCTCCCCGCTGCACTAAGAAA
AGGCAAAGCGGCTGACTTTGCCACTCTACAAGAATGGCAACTGACCGAGTTAGGCAAAAACCAGTTGATGCAAGGGTTAA
ACAGTCGCGCGATAAAGCAAGCGAAAGTATTGAATATGCTTGCTAATGGCCCTCTGCCTCACCAAGCCTTTTTGGATGAG
GAAGTGGCATCCACAACCTTACGCACCTTGGAAGAAAAAGGCTGGATCAGCTGTGAAGAAAAAACGCCACAGTTGGCTCG
TTGGGGGAATCCGATTGAACATCCCGTCGATAAGCCGAAACTCAACCAAGAGCAAGCCATTGCCATTTCGACCGTTAACA
GCCAGACAGACTTTGGCTGTTATCTGTTGGAAGGGGTCACAGGTTCAGGCAAAACCGAAGTTTATCTCAACTTGATCAAA
CCCATTTTGGAACAAGGCAAACAGGCTCTGGTATTGGTCCCTGAAATTGGTTTAACACCACAAACCATCAATCGTTTTCG
TCAACGATTTGATGTGCCAGTCGCCGTCATCCATTCTGGTCTTAATGATACGGAACGTCTCAACGCTTGGCTTTCCGCAC
GAGACAAAGCGGCGGGCATTGTCATTGGTACACGCTCTGCACTACTGATCCCATTTGCTCAGTTGGGGATCATCATTGTC
GATGAAGAGCACGACGCTTCGTACAAACAGCAAGATAGCTTGCGTTACCATGCTCGCGATGTGGCTGTGATGCGAGCGGC
AAAAGAAGGCATTCCAATTGTTCTCGGTTCAGCCACGCCCGCGTTAGAAACCTTACACAACGCACTTACGGGCAAATATC
ATCATCTCTCGCTAACCCAACGAGCAGGAGTGGCCGTGCCAACCACCAACAAAGTGCTGGATGTCAAAGGGCTCTATCTG
GAAAGCGGCCTCTCAGCGCCACTCATTGCTGAAATGCGTCGTCATTTAAAAGCGGGCAATCAGGTGATGCTGTTTCTCAA
CCGTCGAGGCTTCTCCCCTGCGTTAATGTGTCATGAATGTGGTTGGATTGCCGAATGCAAACGCTGCGATGCCTATTACA
CTTATCACCAGTACAGCAATGAAATCCGCTGTCACCACTGTGGTTCTCAACAACCTATTATCCATCAATGCCAAGGTTGT
GGTTCGACACAACTGGTGACGGTTGGTGTCGGCACTGAGCAACTGGAAAACCAGTTGACGGCCCTGTTTCCAGACTACAA
AGCGATTCGCATCGACCGCGATAGCACACGACGCAAAGGCAGCCTCGAAAGCGCTTTAGAAGCCATTCGCAAAGGGGAAT
ACCAAATTTTAATTGGCACGCAAATGCTAGCTAAAGGGCATCATTTCCCAGACGTGACGTTAGTGGCACTATTGGATGTT
GATGGGTCACTGTACAGCAGTGATTTCCGAGCGTCCGAACGATTGGCTCAGTTGTTTATTCAAGTAGCCGGACGAGCAGG
GCGTGCTAGCAAACCTGGCGAAGTGATATTACAAACCCACCATCCAGAACACACCTTGCTCAAAGCTCTGTTGACCAAGG
ATTACCGGCATTTTGCGCAGTCTGCACTGGAAGAGCGGAAAATTGCCCAACTTCCCCCGTTTAGTTTTCTAACGCTATTT
CGCGCAGAAGCCAATCACAGCGAAATCGTCGAAACATTCTTACGTCAAGTGCGTATGACTCTCGAGTCGCATCCCTTGTT
TGATCACACTTGTCTCGTGCTCGGTCCAACCCCCGCTCCACTGGCCAAACGTGCGGGCAAATACCGCTGGCAGCTTCTGC
TTCAAACTCAACATCGTTCCTTGATGCAGAAAATACTCTCGAGCACGAAACCTGCTATCGATTTGTTACCAGATGCGAAA
AAAGTACGTTGGAATTTGGATATTGAGCCACAGGATCTGAGTTAG

Domains

Predicted by InterProScan.

Primosomal protein N C-terminal domain (PriA_C)

(633-730)

DEAD/DEAH box helicase (DEAD)

(205-364)

Helicase conserved C-terminal domain (Helicase_C)

(514-589)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(446-472)

3DNA-binding domain (3BD) (PriA_3primeBD)

(7-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

43.342

100

0.435