Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   NRS07_RS03130 Genome accession   NZ_CP103371
Coordinates   703038..704534 (+) Length   498 a.a.
NCBI ID   WP_259211101.1    Uniprot ID   -
Organism   Massilia sp. H6     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 698038..709534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRS07_RS03105 (NRS07_03105) - 699490..700512 (+) 1023 WP_307729949.1 KpsF/GutQ family sugar-phosphate isomerase -
  NRS07_RS03110 (NRS07_03110) - 700512..701054 (+) 543 WP_259211093.1 HAD family hydrolase -
  NRS07_RS03115 (NRS07_03115) lptC 701073..701675 (+) 603 WP_259211095.1 LPS export ABC transporter periplasmic protein LptC -
  NRS07_RS03120 (NRS07_03120) lptA 701705..702265 (+) 561 WP_259211096.1 lipopolysaccharide transport periplasmic protein LptA -
  NRS07_RS03125 (NRS07_03125) lptB 702262..703035 (+) 774 WP_259211099.1 LPS export ABC transporter ATP-binding protein -
  NRS07_RS03130 (NRS07_03130) rpoN/rpoN1 703038..704534 (+) 1497 WP_259211101.1 RNA polymerase factor sigma-54 Machinery gene
  NRS07_RS03135 (NRS07_03135) hpf 704591..704944 (+) 354 WP_259211103.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  NRS07_RS03140 (NRS07_03140) - 705113..706198 (+) 1086 WP_259211105.1 enoyl-CoA hydratase/isomerase family protein -
  NRS07_RS03145 (NRS07_03145) rapZ 706224..707102 (-) 879 WP_259211106.1 RNase adapter RapZ -
  NRS07_RS03150 (NRS07_03150) hprK 707160..708095 (-) 936 WP_259211110.1 HPr(Ser) kinase/phosphatase -
  NRS07_RS03155 (NRS07_03155) - 708155..708637 (-) 483 WP_259211113.1 PTS sugar transporter subunit IIA -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 54428.64 Da        Isoelectric Point: 5.0452

>NTDB_id=722362 NRS07_RS03130 WP_259211101.1 703038..704534(+) (rpoN/rpoN1) [Massilia sp. H6]
MKQSLQLRTSQHLALTPQLQQSIRLLQLSTLELHQELEQILTDNPLLERLDDPLDHSVRLLADGAINNAAASAPANGEAP
AQPGQEAGAEASKAEGEGADASDDGADRDRGEPDGDWGGEGGGARSGDDEDGRPQLEASGVSLREHLAEQVRTTGCSMRD
RALAELVIDALDDNGYLEEPLDDIHARLPGELDIEMDELRCALALVQSLDPAGVGARSAAECLALQIRRMPGVPLVTRRL
ALKIVEGYLSWFAQREYTKLKKALACDDEDLREVQAVVRQCNPHPGAAFGTNASDYVVPDVVVRRAKDGWSVMLNRDVMP
RLRVNTLYANLLKQGKSESQMGAQLQEAKWLIKNMRQRFDTILRVAEAIVERQRNFFSHGAVAMRPLVLREIADTLGLHE
STISRVTTQKYMLTPHGMFELKYFFGSHVATEAGGEASSTAIRALIAQLTGAEDPKSPLSDSKIAEMLGEQGMVVARRTV
AKYREALKIPPVSLRKSL

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=722362 NRS07_RS03130 WP_259211101.1 703038..704534(+) (rpoN/rpoN1) [Massilia sp. H6]
ATGAAACAGTCCCTGCAACTACGCACGTCGCAGCACCTGGCGCTCACGCCGCAGCTGCAACAGTCGATCCGGCTGCTGCA
GTTGTCCACGCTCGAACTGCACCAGGAACTCGAGCAGATACTGACCGATAACCCGCTGCTCGAAAGGCTCGACGATCCGC
TCGACCATTCGGTGCGGCTGCTGGCCGATGGCGCCATTAACAATGCAGCTGCGAGCGCGCCGGCCAATGGCGAAGCGCCC
GCGCAGCCGGGACAGGAAGCCGGCGCCGAGGCGTCCAAGGCCGAAGGCGAAGGCGCCGATGCGAGCGATGATGGCGCCGA
CCGCGATCGCGGCGAGCCCGATGGCGACTGGGGCGGCGAGGGCGGCGGCGCCCGCAGCGGCGACGACGAAGACGGCCGCC
CGCAGCTCGAGGCCAGCGGCGTGTCGCTGCGCGAGCACCTGGCCGAGCAGGTGCGCACCACCGGCTGCAGCATGCGCGAC
CGCGCGCTGGCCGAACTCGTGATCGACGCGCTCGACGACAATGGCTACCTCGAAGAACCGCTGGACGACATCCACGCGCG
CCTGCCGGGTGAACTCGACATCGAGATGGACGAATTGCGCTGCGCGCTGGCGCTGGTGCAGAGCCTCGACCCGGCCGGGG
TTGGCGCGCGCAGCGCGGCCGAATGCCTGGCGCTGCAGATCCGCCGCATGCCGGGCGTGCCGCTGGTAACGCGGCGCCTG
GCGCTGAAGATCGTCGAAGGCTACCTGAGCTGGTTCGCGCAGCGCGAATACACCAAGCTCAAAAAGGCGTTGGCCTGCGA
CGACGAAGACCTGCGCGAGGTGCAGGCCGTGGTTCGCCAGTGCAATCCGCATCCGGGTGCGGCCTTTGGAACCAACGCAT
CCGACTACGTGGTGCCGGACGTGGTGGTGCGCCGCGCCAAGGATGGCTGGTCGGTGATGCTCAATCGGGACGTGATGCCG
CGCCTGCGCGTCAATACCCTGTATGCGAACCTGCTCAAGCAGGGAAAAAGCGAAAGCCAGATGGGCGCGCAGCTGCAGGA
AGCCAAATGGCTGATCAAGAATATGCGCCAGCGTTTCGATACCATCTTGCGTGTGGCCGAGGCGATTGTAGAGCGTCAGC
GCAACTTTTTCAGCCATGGCGCAGTTGCCATGCGCCCTCTTGTGCTGCGCGAGATTGCTGATACACTAGGCCTACACGAG
AGCACTATTTCCCGTGTAACCACGCAGAAATACATGCTGACCCCCCACGGCATGTTCGAGCTGAAATACTTCTTCGGAAG
CCATGTCGCCACCGAAGCGGGGGGAGAAGCCTCTTCCACGGCGATCCGCGCGCTCATTGCGCAACTGACAGGAGCTGAAG
ACCCTAAGAGCCCTTTATCCGATAGCAAGATCGCGGAAATGCTGGGGGAACAAGGTATGGTCGTTGCGCGCCGAACGGTT
GCCAAATACCGCGAAGCCCTCAAGATCCCACCTGTCAGCCTCCGCAAATCCTTGTAA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(137-328)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(342-496)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

59.369

100

0.604