Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PVE41_RS04300 Genome accession   NZ_CP118438
Coordinates   860938..861540 (-) Length   200 a.a.
NCBI ID   WP_011079901.1    Uniprot ID   Q7MIV4
Organism   Vibrio vulnificus strain 1908-10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 855938..866540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVE41_RS04280 (PVE41_04280) - 856291..857010 (+) 720 WP_108654279.1 response regulator transcription factor -
  PVE41_RS04285 (PVE41_04285) - 857007..858614 (+) 1608 WP_228512913.1 ATP-binding protein -
  PVE41_RS04290 (PVE41_04290) - 858681..859715 (+) 1035 WP_282500105.1 DUF2860 family protein -
  PVE41_RS04295 (PVE41_04295) - 859731..860876 (+) 1146 WP_282500106.1 hypothetical protein -
  PVE41_RS04300 (PVE41_04300) recR 860938..861540 (-) 603 WP_011079901.1 recombination mediator RecR Machinery gene
  PVE41_RS04305 (PVE41_04305) - 861556..861885 (-) 330 WP_011150874.1 YbaB/EbfC family nucleoid-associated protein -
  PVE41_RS04310 (PVE41_04310) dnaX 861963..864068 (-) 2106 WP_045620558.1 DNA polymerase III subunit gamma/tau -
  PVE41_RS04315 (PVE41_04315) apt 864077..864622 (-) 546 WP_011079898.1 adenine phosphoribosyltransferase -
  PVE41_RS04320 (PVE41_04320) - 864788..865153 (-) 366 WP_080932368.1 YbaN family protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21870.99 Da        Isoelectric Point: 6.2673

>NTDB_id=722357 PVE41_RS04300 WP_011079901.1 860938..861540(-) (recR) [Vibrio vulnificus strain 1908-10]
MRTSHMLEQLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLADALSHAMTEIGHCNECRTFTEEDVCHICNNPKRQEN
GLLCVVESPADIAAVEATGQFSGRYFVLMGHLSPLDGIGPSDIGLDVLDYRLRRGDIKEVILATNPTVEGEATAHYIAEL
CREHKVDASRIAHGVPVGGELELVDGTTLSHSLLGRHKLN

Nucleotide


Download         Length: 603 bp        

>NTDB_id=722357 PVE41_RS04300 WP_011079901.1 860938..861540(-) (recR) [Vibrio vulnificus strain 1908-10]
ATGCGTACCAGCCATATGCTGGAACAATTGATGGAGGCCTTACGTTGTTTGCCTGGGGTTGGTCCCAAGTCAGCACAGCG
TATGGCCTTTCATTTGTTACAGCGAGATAGAAAAGGCGGCCTGCAGCTTGCGGATGCATTAAGTCATGCCATGACGGAAA
TTGGTCACTGTAACGAGTGCCGTACTTTTACCGAAGAAGACGTGTGTCATATCTGCAACAACCCAAAACGCCAAGAAAAC
GGATTATTGTGTGTGGTCGAAAGCCCTGCCGATATCGCTGCGGTGGAAGCCACAGGACAATTCTCTGGTCGTTACTTTGT
GTTGATGGGGCACCTATCACCGCTTGATGGTATTGGACCTAGTGATATTGGCCTCGATGTCCTCGATTATCGTCTGCGTC
GCGGTGATATCAAAGAAGTGATCTTAGCGACCAACCCTACCGTGGAAGGTGAAGCGACTGCGCACTACATCGCTGAACTT
TGTCGAGAGCATAAAGTGGACGCCAGTCGAATTGCTCATGGTGTGCCCGTCGGTGGGGAGCTTGAGCTGGTGGATGGCAC
GACACTCTCCCATTCGTTACTGGGCAGACACAAACTCAACTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(83-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MIV4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

43.719

99.5

0.435
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.5

100

0.435