Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   PVF01_RS23470 Genome accession   NZ_CP118407
Coordinates   4885749..4886741 (-) Length   330 a.a.
NCBI ID   WP_000224470.1    Uniprot ID   P0ACQ1
Organism   Escherichia coli strain GABEEC10     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4880749..4891741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVF01_RS23460 (PVF01_23370) yieP 4883641..4884333 (+) 693 WP_001131161.1 FadR/GntR family transcriptional regulator -
  PVF01_RS23465 (PVF01_23375) mdtD 4884356..4885783 (+) 1428 WP_021552949.1 multidrug transporter subunit MdtD -
  PVF01_RS23470 (PVF01_23380) cytR 4885749..4886741 (-) 993 WP_000224470.1 ribose operon transcriptional repressor RbsR Regulator
  PVF01_RS23475 (PVF01_23385) rbsK 4886745..4887674 (-) 930 WP_001361791.1 ribokinase -
  PVF01_RS23480 (PVF01_23390) rbsB 4887800..4888690 (-) 891 WP_001297966.1 ribose ABC transporter substrate-binding protein RbsB -
  PVF01_RS23485 (PVF01_23395) rbsC 4888715..4889680 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  PVF01_RS23490 (PVF01_23400) rbsA 4889685..4891190 (-) 1506 WP_000387770.1 ribose ABC transporter ATP-binding protein RbsA -
  PVF01_RS23495 (PVF01_23405) rbsD 4891198..4891683 (-) 486 WP_406675851.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36611.90 Da        Isoelectric Point: 5.2141

>NTDB_id=722343 PVF01_RS23470 WP_000224470.1 4885749..4886741(-) (cytR) [Escherichia coli strain GABEEC10]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=722343 PVF01_RS23470 WP_000224470.1 4885749..4886741(-) (cytR) [Escherichia coli strain GABEEC10]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACAGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTTGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGTAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACCGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATTGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCTGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACAACTATACACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTACAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGTGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0ACQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364