Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NX823_RS16555 Genome accession   NZ_CP103352
Coordinates   3085296..3085940 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM117508     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3080296..3090940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX823_RS16520 (NX823_16520) mrpB 3081488..3081919 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  NX823_RS16525 (NX823_16525) mrpC 3081919..3082260 (+) 342 WP_014480700.1 Na(+)/H(+) antiporter subunit C -
  NX823_RS16530 (NX823_16530) mrpD 3082253..3083734 (+) 1482 WP_033881486.1 Na+/H+ antiporter subunit D -
  NX823_RS16535 (NX823_16535) mrpE 3083740..3084216 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  NX823_RS16540 (NX823_16540) mrpF 3084216..3084500 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  NX823_RS16545 (NX823_16545) mnhG 3084484..3084858 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  NX823_RS16550 (NX823_16550) yuxO 3084897..3085277 (-) 381 WP_069837723.1 hotdog fold thioesterase -
  NX823_RS16555 (NX823_16555) comA 3085296..3085940 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  NX823_RS16560 (NX823_16560) comP 3086021..3088333 (-) 2313 WP_103330147.1 sensor histidine kinase Regulator
  NX823_RS16565 (NX823_16565) comX 3088349..3088570 (-) 222 WP_014480704.1 competence pheromone ComX -
  NX823_RS16570 (NX823_16570) - 3088572..3089435 (-) 864 WP_014480705.1 polyprenyl synthetase family protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=722319 NX823_RS16555 WP_003220716.1 3085296..3085940(-) (comA) [Bacillus subtilis strain SRCM117508]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=722319 NX823_RS16555 WP_003220716.1 3085296..3085940(-) (comA) [Bacillus subtilis strain SRCM117508]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGACTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAATGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1