Detailed information
Bioinformatically predicted
Overview
| Name | nucA/comI | Type | Machinery gene |
| Locus tag | NX823_RS13270 | Genome accession | NZ_CP103352 |
| Coordinates | 2487224..2487634 (-) | Length | 136 a.a. |
| NCBI ID | WP_009967785.1 | Uniprot ID | A0A6I4D881 |
| Organism | Bacillus subtilis strain SRCM117508 | ||
| Function | cleavage of dsDNA into ssDNA (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2478749..2509063 | 2487224..2487634 | within | 0 |
| IS/Tn | 2485739..2487091 | 2487224..2487634 | flank | 133 |
Gene organization within MGE regions
Location: 2478749..2509063
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NX823_RS13225 (NX823_13225) | yqeH | 2478749..2479849 (-) | 1101 | WP_003229966.1 | ribosome biogenesis GTPase YqeH | - |
| NX823_RS13230 (NX823_13230) | yqeG | 2479853..2480371 (-) | 519 | WP_003226126.1 | YqeG family HAD IIIA-type phosphatase | - |
| NX823_RS13235 (NX823_13235) | - | 2480733..2480873 (+) | 141 | WP_003226124.1 | sporulation histidine kinase inhibitor Sda | - |
| NX823_RS13240 (NX823_13240) | yqeF | 2481179..2481910 (-) | 732 | WP_003229964.1 | SGNH/GDSL hydrolase family protein | - |
| NX823_RS13245 (NX823_13245) | cwlH | 2482162..2482914 (-) | 753 | WP_069837642.1 | N-acetylmuramoyl-L-alanine amidase CwlH | - |
| NX823_RS13250 (NX823_13250) | yqeD | 2483101..2483727 (+) | 627 | WP_014480319.1 | TVP38/TMEM64 family protein | - |
| NX823_RS13255 (NX823_13255) | gnd | 2483746..2484639 (-) | 894 | WP_069837643.1 | phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) | - |
| NX823_RS13260 (NX823_13260) | yqeB | 2484890..2485612 (+) | 723 | WP_014480321.1 | hypothetical protein | - |
| NX823_RS13265 (NX823_13265) | - | 2485739..2487091 (+) | 1353 | WP_014478984.1 | IS1182 family transposase | - |
| NX823_RS13270 (NX823_13270) | nucA/comI | 2487224..2487634 (-) | 411 | WP_009967785.1 | sporulation-specific Dnase NucB | Machinery gene |
| NX823_RS13275 (NX823_13275) | sigK | 2487830..2488558 (+) | 729 | WP_013308023.1 | RNA polymerase sporulation sigma factor SigK | - |
| NX823_RS13280 (NX823_13280) | - | 2488558..2488656 (+) | 99 | WP_031600702.1 | hypothetical protein | - |
| NX823_RS13285 (NX823_13285) | - | 2488653..2488865 (-) | 213 | Protein_2569 | recombinase family protein | - |
| NX823_RS13290 (NX823_13290) | fumC | 2489084..2490472 (-) | 1389 | WP_014480325.1 | class II fumarate hydratase | - |
| NX823_RS13295 (NX823_13295) | - | 2490639..2491529 (+) | 891 | WP_014480326.1 | LysR family transcriptional regulator | - |
| NX823_RS13300 (NX823_13300) | - | 2492471..2492866 (+) | 396 | WP_046160622.1 | VOC family protein | - |
| NX823_RS13310 (NX823_13310) | - | 2493606..2494733 (-) | 1128 | WP_014480328.1 | Rap family tetratricopeptide repeat protein | - |
| NX823_RS22075 (NX823_13315) | - | 2494915..2495748 (+) | 834 | Protein_2574 | ribonuclease YeeF family protein | - |
| NX823_RS22080 (NX823_13320) | - | 2496134..2496841 (+) | 708 | WP_014480330.1 | hypothetical protein | - |
| NX823_RS13325 (NX823_13325) | - | 2496855..2497142 (+) | 288 | WP_014480331.1 | hypothetical protein | - |
| NX823_RS13330 (NX823_13330) | - | 2497545..2497985 (+) | 441 | WP_014480332.1 | SMI1/KNR4 family protein | - |
| NX823_RS13335 (NX823_13335) | - | 2498084..2498536 (+) | 453 | WP_014480333.1 | SMI1/KNR4 family protein | - |
| NX823_RS13340 (NX823_13340) | cdiI | 2498633..2498992 (+) | 360 | WP_014480334.1 | ribonuclease toxin immunity protein CdiI | - |
| NX823_RS13345 (NX823_13345) | - | 2499097..2499576 (+) | 480 | WP_224588637.1 | hypothetical protein | - |
| NX823_RS13350 (NX823_13350) | - | 2499884..2500087 (-) | 204 | WP_123772462.1 | hypothetical protein | - |
| NX823_RS13355 (NX823_13355) | - | 2500176..2500409 (+) | 234 | WP_224588641.1 | hypothetical protein | - |
| NX823_RS13360 (NX823_13360) | atxG | 2500677..2501254 (+) | 578 | Protein_2583 | suppressor of fused domain protein | - |
| NX823_RS13365 (NX823_13365) | - | 2501364..2501654 (+) | 291 | WP_014480337.1 | contact-dependent growth inhibition system immunity protein | - |
| NX823_RS22085 | - | 2502563..2502729 (-) | 167 | Protein_2585 | peptidoglycan-binding protein | - |
| NX823_RS13375 (NX823_13375) | - | 2502904..2502990 (+) | 87 | WP_072592549.1 | putative holin-like toxin | - |
| NX823_RS22090 | - | 2503277..2503752 (-) | 476 | Protein_2587 | phage tail tube protein | - |
| NX823_RS13390 (NX823_13390) | terS | 2503712..2504276 (-) | 565 | Protein_2588 | phage terminase small subunit | - |
| NX823_RS13395 (NX823_13395) | - | 2504403..2504708 (+) | 306 | WP_123772463.1 | hypothetical protein | - |
| NX823_RS13405 (NX823_13405) | - | 2505101..2505580 (-) | 480 | WP_014480344.1 | hypothetical protein | - |
| NX823_RS13410 (NX823_13410) | - | 2506197..2506463 (+) | 267 | WP_033881358.1 | hypothetical protein | - |
| NX823_RS13415 (NX823_13415) | - | 2506602..2506754 (-) | 153 | WP_049832653.1 | XtrA/YqaO family protein | - |
| NX823_RS13420 (NX823_13420) | - | 2506837..2506959 (-) | 123 | Protein_2593 | RusA family crossover junction endodeoxyribonuclease | - |
| NX823_RS13425 (NX823_13425) | - | 2506922..2507170 (-) | 249 | Protein_2594 | hypothetical protein | - |
| NX823_RS13430 (NX823_13430) | - | 2507315..2507545 (-) | 231 | WP_224588644.1 | hypothetical protein | - |
| NX823_RS13435 (NX823_13435) | - | 2507854..2508034 (-) | 181 | Protein_2596 | hypothetical protein | - |
| NX823_RS13440 (NX823_13440) | bltR | 2508242..2509063 (-) | 822 | WP_014480349.1 | multidrug efflux transcriptional regulator BltR | - |
Sequence
Protein
Download Length: 136 a.a. Molecular weight: 14967.97 Da Isoelectric Point: 5.1853
>NTDB_id=722310 NX823_RS13270 WP_009967785.1 2487224..2487634(-) (nucA/comI) [Bacillus subtilis strain SRCM117508]
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ
Nucleotide
Download Length: 411 bp
>NTDB_id=722310 NX823_RS13270 WP_009967785.1 2487224..2487634(-) (nucA/comI) [Bacillus subtilis strain SRCM117508]
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGAGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGCGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGCACCAGAGTGCTGTTTA
TTGTGCAGTAG
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGAGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGCGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGCACCAGAGTGCTGTTTA
TTGTGCAGTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| nucA/comI | Bacillus subtilis subsp. subtilis str. 168 |
62.609 |
84.559 |
0.529 |