Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PVF01_RS09705 Genome accession   NZ_CP118407
Coordinates   2012510..2013139 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain GABEEC10     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2007510..2018139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVF01_RS09685 (PVF01_09640) ycbZ 2007912..2009672 (-) 1761 WP_000156496.1 Lon protease family protein -
  PVF01_RS09690 (PVF01_09645) matP 2009858..2010310 (+) 453 WP_000877152.1 macrodomain Ter protein MatP -
  PVF01_RS09695 (PVF01_09650) ompA 2010386..2011426 (-) 1041 WP_001313715.1 porin OmpA -
  PVF01_RS09700 (PVF01_09655) sulA 2011782..2012291 (-) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  PVF01_RS09705 (PVF01_09660) sxy/tfoX 2012510..2013139 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  PVF01_RS09710 (PVF01_09665) yccS 2013102..2015264 (-) 2163 WP_000875067.1 YccS family putative transporter -
  PVF01_RS09715 (PVF01_09670) yccF 2015274..2015720 (-) 447 WP_001261235.1 YccF domain-containing protein -
  PVF01_RS09720 (PVF01_09675) helD 2015843..2017897 (+) 2055 WP_001541157.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=722302 PVF01_RS09705 WP_000839153.1 2012510..2013139(+) (sxy/tfoX) [Escherichia coli strain GABEEC10]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=722302 PVF01_RS09705 WP_000839153.1 2012510..2013139(+) (sxy/tfoX) [Escherichia coli strain GABEEC10]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGTATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCAAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1