Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PVF01_RS07235 Genome accession   NZ_CP118407
Coordinates   1511485..1512090 (+) Length   201 a.a.
NCBI ID   WP_001195024.1    Uniprot ID   -
Organism   Escherichia coli strain GABEEC10     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1506485..1517090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVF01_RS07205 (PVF01_07190) rsmS 1507190..1507351 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  PVF01_RS07210 (PVF01_07195) priC 1507365..1507892 (-) 528 WP_000844854.1 primosomal replication protein N'' -
  PVF01_RS07215 (PVF01_07200) ybaN 1507962..1508339 (+) 378 WP_001188900.1 DUF454 family protein -
  PVF01_RS07220 (PVF01_07205) apt 1508492..1509043 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  PVF01_RS07225 (PVF01_07210) dnaX 1509172..1511103 (+) 1932 WP_000122025.1 DNA polymerase III subunit gamma/tau -
  PVF01_RS07230 (PVF01_07215) ybaB 1511156..1511485 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  PVF01_RS07235 (PVF01_07220) recR 1511485..1512090 (+) 606 WP_001195024.1 recombination mediator RecR Machinery gene
  PVF01_RS07240 (PVF01_07225) htpG 1512200..1514074 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  PVF01_RS07245 (PVF01_07230) adk 1514255..1514899 (+) 645 WP_001313630.1 adenylate kinase -
  PVF01_RS07250 (PVF01_07235) hemH 1515031..1515993 (+) 963 WP_001250114.1 ferrochelatase -
  PVF01_RS07255 (PVF01_07240) aes 1515968..1516936 (-) 969 WP_000801820.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.04 Da        Isoelectric Point: 5.0822

>NTDB_id=722295 PVF01_RS07235 WP_001195024.1 1511485..1512090(+) (recR) [Escherichia coli strain GABEEC10]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRKEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=722295 PVF01_RS07235 WP_001195024.1 1511485..1512090(+) (recR) [Escherichia coli strain GABEEC10]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGCCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTAAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443