Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NX823_RS07965 Genome accession   NZ_CP103352
Coordinates   1538664..1538942 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain SRCM117508     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1533664..1543942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX823_RS07945 (NX823_07945) panEB 1534851..1535762 (+) 912 WP_017696822.1 ketopantoate reductase family protein -
  NX823_RS07950 (NX823_07950) ampS 1535796..1537028 (-) 1233 WP_003232341.1 aminopeptidase -
  NX823_RS07955 (NX823_07955) ykpC 1537138..1537272 (-) 135 WP_003238865.1 protein YkpC -
  NX823_RS07960 (NX823_07960) mreBH 1537373..1538380 (-) 1008 WP_026113694.1 cell shape-determining protein MreBH -
  NX823_RS07965 (NX823_07965) abrB 1538664..1538942 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  NX823_RS07970 (NX823_07970) kinC 1539132..1540418 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  NX823_RS07975 (NX823_07975) ykqA 1540434..1541267 (+) 834 WP_014479687.1 gamma-glutamylcyclotransferase -
  NX823_RS07980 (NX823_07980) ktrC 1541330..1541995 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  NX823_RS07985 (NX823_07985) ade 1542150..1543883 (+) 1734 WP_069837481.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=722289 NX823_RS07965 WP_003244728.1 1538664..1538942(+) (abrB) [Bacillus subtilis strain SRCM117508]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=722289 NX823_RS07965 WP_003244728.1 1538664..1538942(+) (abrB) [Bacillus subtilis strain SRCM117508]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576