Detailed information NTG0722284

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PVF01_RS05770
• Genome accession: NZ_CP118407
• Coordinates: 1208812..1209804 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain GABEEC10
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1203812..1214804

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PVF01_RS05740 (PVF01_05715)	ispD	1203873..1204583 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
PVF01_RS05745 (PVF01_05720)	ispF	1204583..1205062 (+)	480	WP_001219252.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PVF01_RS05750 (PVF01_05725)	truD	1205059..1206108 (+)	1050	WP_000568931.1	tRNA pseudouridine(13) synthase TruD	-
PVF01_RS05755 (PVF01_05730)	surE	1206089..1206850 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
PVF01_RS05760 (PVF01_05735)	pcm	1206844..1207470 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
PVF01_RS05765 (PVF01_05740)	nlpD	1207655..1208749 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
PVF01_RS05770 (PVF01_05745)	rpoS	1208812..1209804 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
PVF01_RS05775 (PVF01_05750)	-	1209982..1210533 (-)	552	WP_001179442.1	flavodoxin family protein	-
PVF01_RS05780 (PVF01_05755)	-	1210758..1211801 (+)	1044	WP_021552882.1	MBL fold metallo-hydrolase	-
PVF01_RS05785 (PVF01_05760)	ygbN	1211944..1213308 (-)	1365	WP_000104433.1	GntP family transporter	-
PVF01_RS05790 (PVF01_05765)	ygbM	1213397..1214173 (-)	777	WP_001136928.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=722284 PVF01_RS05770 WP_000081550.1 1208812..1209804(+) (rpoS) [Escherichia coli strain GABEEC10]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=722284 PVF01_RS05770 WP_000081550.1 1208812..1209804(+) (rpoS) [Escherichia coli strain GABEEC10]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGTTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715