Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   NX823_RS05765 Genome accession   NZ_CP103352
Coordinates   1136910..1137488 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain SRCM117508     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1131910..1142488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX823_RS22030 - 1132430..1132945 (-) 516 WP_326255844.1 methyl-accepting chemotaxis protein -
  NX823_RS22035 - 1133234..1133812 (-) 579 Protein_1067 protoglobin domain-containing protein -
  NX823_RS05750 (NX823_05750) comW 1133867..1135395 (-) 1529 Protein_1068 FAD-dependent oxidoreductase -
  NX823_RS05755 (NX823_05755) yhxC 1135499..1136356 (+) 858 WP_014479371.1 SDR family oxidoreductase -
  NX823_RS05760 (NX823_05760) yhzC 1136384..1136617 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  NX823_RS05765 (NX823_05765) comK 1136910..1137488 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  NX823_RS05770 (NX823_05770) yhxD 1137533..1138432 (-) 900 WP_014479372.1 SDR family oxidoreductase -
  NX823_RS05775 (NX823_05775) yhjA 1138649..1138918 (+) 270 WP_014479373.1 excalibur calcium-binding domain-containing protein -
  NX823_RS05780 (NX823_05780) yhjB 1138962..1140431 (-) 1470 WP_014479374.1 sodium:solute symporter -
  NX823_RS05785 (NX823_05785) yhjC 1140428..1140628 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  NX823_RS05790 (NX823_05790) - 1140827..1141198 (-) 372 WP_014476361.1 hypothetical protein -
  NX823_RS05795 (NX823_05795) yhjE 1141350..1141973 (+) 624 WP_014479375.1 TVP38/TMEM64 family protein -
  NX823_RS05800 (NX823_05800) lepB 1141975..1142481 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=722275 NX823_RS05765 WP_003245329.1 1136910..1137488(+) (comK) [Bacillus subtilis strain SRCM117508]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=722275 NX823_RS05765 WP_003245329.1 1136910..1137488(+) (comK) [Bacillus subtilis strain SRCM117508]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATATGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAATCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAGTTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1