Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NX823_RS00250 Genome accession   NZ_CP103352
Coordinates   45293..45583 (-) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus subtilis strain SRCM117508     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 40293..50583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX823_RS00210 (NX823_00210) darA 40316..40645 (+) 330 WP_088272133.1 cyclic di-AMP receptor DarA -
  NX823_RS00215 (NX823_00215) yaaR 40658..41098 (+) 441 WP_009966249.1 YaaR family protein -
  NX823_RS00220 (NX823_00220) holB 41110..42099 (+) 990 WP_088272134.1 DNA polymerase III subunit delta' -
  NX823_RS00225 (NX823_00225) ricT 42102..42929 (+) 828 WP_003226767.1 competence/sporulation regulator complex protein RicT -
  NX823_RS00230 (NX823_00230) yabA 42944..43303 (+) 360 WP_003218308.1 replication initiation-control protein YabA -
  NX823_RS00235 (NX823_00235) trmNF 43362..44105 (+) 744 WP_041338388.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  NX823_RS00240 (NX823_00240) yazA 44092..44391 (+) 300 WP_069837179.1 GIY-YIG nuclease family protein -
  NX823_RS00245 (NX823_00245) rsmI 44366..45244 (+) 879 WP_087614199.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  NX823_RS00250 (NX823_00250) abrB 45293..45583 (-) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  NX823_RS00255 (NX823_00255) metG 46078..48072 (+) 1995 WP_014478594.1 methionine--tRNA ligase -
  NX823_RS00260 (NX823_00260) dayD 48152..48919 (+) 768 WP_087614201.1 TatD family hydrolase -
  NX823_RS00265 (NX823_00265) yabE 49075..50388 (+) 1314 WP_087614203.1 ubiquitin-like domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=722260 NX823_RS00250 WP_003226760.1 45293..45583(-) (abrB) [Bacillus subtilis strain SRCM117508]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=722260 NX823_RS00250 WP_003226760.1 45293..45583(-) (abrB) [Bacillus subtilis strain SRCM117508]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1