Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   NX819_RS12425 Genome accession   NZ_CP103351
Coordinates   2433363..2434166 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM115947     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2428363..2439166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX819_RS12400 (NX819_12400) glpQB 2429501..2430232 (-) 732 WP_038429286.1 glycerophosphodiester phosphodiesterase -
  NX819_RS12405 (NX819_12405) yqiI 2430311..2430931 (-) 621 WP_072173938.1 N-acetylmuramoyl-L-alanine amidase -
  NX819_RS12410 (NX819_12410) - 2430951..2431247 (-) 297 WP_014480225.1 hypothetical protein -
  NX819_RS12415 (NX819_12415) - 2431555..2431707 (+) 153 WP_014480226.1 hypothetical protein -
  NX819_RS12420 (NX819_12420) yqiG 2431780..2432898 (+) 1119 WP_131227606.1 NADH-dependent flavin oxidoreductase -
  NX819_RS12425 (NX819_12425) spo0A 2433363..2434166 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  NX819_RS12430 (NX819_12430) spoIVB 2434442..2435722 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  NX819_RS12435 (NX819_12435) recN 2435897..2437627 (-) 1731 WP_003230267.1 DNA repair protein RecN Machinery gene
  NX819_RS12440 (NX819_12440) argR 2437664..2438113 (-) 450 WP_003230265.1 arginine repressor ArgR -
  NX819_RS12445 (NX819_12445) yqxC 2438211..2439056 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=722216 NX819_RS12425 WP_003226427.1 2433363..2434166(-) (spo0A) [Bacillus subtilis strain SRCM115947]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=722216 NX819_RS12425 WP_003226427.1 2433363..2434166(-) (spo0A) [Bacillus subtilis strain SRCM115947]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATCTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1