Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NX819_RS08180 Genome accession   NZ_CP103351
Coordinates   1542676..1542954 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain SRCM115947     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1537676..1547954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX819_RS08160 (NX819_08160) panEB 1538863..1539774 (+) 912 WP_003245639.1 ketopantoate reductase family protein -
  NX819_RS08165 (NX819_08165) ampS 1539808..1541040 (-) 1233 WP_003232341.1 aminopeptidase -
  NX819_RS08170 (NX819_08170) ykpC 1541150..1541284 (-) 135 WP_003238865.1 protein YkpC -
  NX819_RS08175 (NX819_08175) mreBH 1541385..1542392 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  NX819_RS08180 (NX819_08180) abrB 1542676..1542954 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  NX819_RS08185 (NX819_08185) kinC 1543144..1544430 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  NX819_RS08190 (NX819_08190) ykqA 1544446..1545279 (+) 834 WP_003245146.1 gamma-glutamylcyclotransferase -
  NX819_RS08195 (NX819_08195) ktrC 1545342..1546007 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  NX819_RS08200 (NX819_08200) ade 1546162..1547895 (+) 1734 WP_003245362.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=722210 NX819_RS08180 WP_003244728.1 1542676..1542954(+) (abrB) [Bacillus subtilis strain SRCM115947]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=722210 NX819_RS08180 WP_003244728.1 1542676..1542954(+) (abrB) [Bacillus subtilis strain SRCM115947]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576