Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   NX810_RS15115 Genome accession   NZ_CP103350
Coordinates   2858780..2859526 (-) Length   248 a.a.
NCBI ID   WP_072692713.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM117108     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2853780..2864526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX810_RS15090 (NX810_15090) mreC 2854189..2855061 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  NX810_RS15095 (NX810_15095) mreB 2855092..2856105 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  NX810_RS15100 (NX810_15100) radC 2856197..2856892 (-) 696 WP_021480240.1 DNA repair protein RadC -
  NX810_RS15105 (NX810_15105) maf 2856929..2857498 (-) 570 WP_085187390.1 Maf family nucleotide pyrophosphatase -
  NX810_RS15110 (NX810_15110) spoIIB 2857651..2858646 (-) 996 WP_259013308.1 stage II sporulation protein SpoIIB -
  NX810_RS15115 (NX810_15115) comC 2858780..2859526 (-) 747 WP_072692713.1 A24 family peptidase Machinery gene
  NX810_RS15120 (NX810_15120) folC 2859668..2860960 (-) 1293 WP_029727116.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  NX810_RS15125 (NX810_15125) valS 2861020..2863662 (-) 2643 WP_029727115.1 valine--tRNA ligase -
  NX810_RS15130 (NX810_15130) - 2864110..2864301 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26453.01 Da        Isoelectric Point: 9.7944

>NTDB_id=722156 NX810_RS15115 WP_072692713.1 2858780..2859526(-) (comC) [Bacillus subtilis strain SRCM117108]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPATELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=722156 NX810_RS15115 WP_072692713.1 2858780..2859526(-) (comC) [Bacillus subtilis strain SRCM117108]
ATGCTATCCATTCTTTTTATCTTCGGACTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAACAGAGCTTGTGACAGCG
TGTTTATTTGCTGCCGCAGGAATACGCTTTGGCACATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGCTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCAGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGGCTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992