Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NX810_RS13700 Genome accession   NZ_CP103350
Coordinates   2616031..2616441 (-) Length   136 a.a.
NCBI ID   WP_009967785.1    Uniprot ID   A0A6I4D881
Organism   Bacillus subtilis strain SRCM117108     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2611031..2621441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX810_RS13670 (NX810_13670) - 2611143..2611283 (+) 141 WP_003226124.1 sporulation histidine kinase inhibitor Sda -
  NX810_RS13675 (NX810_13675) yqeF 2611589..2612320 (-) 732 WP_029726702.1 SGNH/GDSL hydrolase family protein -
  NX810_RS13680 (NX810_13680) cwlH 2612572..2613324 (-) 753 WP_029726701.1 N-acetylmuramoyl-L-alanine amidase CwlH -
  NX810_RS13685 (NX810_13685) yqeD 2613511..2614137 (+) 627 WP_038427798.1 TVP38/TMEM64 family protein -
  NX810_RS13690 (NX810_13690) gnd 2614156..2615024 (-) 869 Protein_2650 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  NX810_RS13695 (NX810_13695) yqeB 2615276..2615998 (+) 723 WP_010886572.1 hypothetical protein -
  NX810_RS13700 (NX810_13700) nucA/comI 2616031..2616441 (-) 411 WP_009967785.1 sporulation-specific Dnase NucB Machinery gene
  NX810_RS13705 (NX810_13705) - 2616637..2616987 (+) 351 Protein_2653 sigma-70 family RNA polymerase sigma factor -
  NX810_RS13710 (NX810_13710) spoIVCA 2617015..2618475 (-) 1461 WP_223257626.1 site-specific DNA recombinase SpoIVCA -
  NX810_RS13715 (NX810_13715) - 2618433..2618611 (-) 179 Protein_2655 hypothetical protein -
  NX810_RS13720 (NX810_13720) arsC 2618966..2619385 (-) 420 WP_004398596.1 thioredoxin-dependent arsenate reductase -
  NX810_RS13725 (NX810_13725) acr3 2619397..2620437 (-) 1041 WP_004398718.1 arsenite efflux transporter Acr3 -
  NX810_RS13730 (NX810_13730) arsK 2620460..2620900 (-) 441 WP_003229954.1 ArsI/CadI family heavy metal resistance metalloenzyme -
  NX810_RS13735 (NX810_13735) arsR 2620961..2621278 (-) 318 WP_004399122.1 arsenical resistance operon transcriptional regulator ArsR -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 14967.97 Da        Isoelectric Point: 5.1853

>NTDB_id=722152 NX810_RS13700 WP_009967785.1 2616031..2616441(-) (nucA/comI) [Bacillus subtilis strain SRCM117108]
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ

Nucleotide


Download         Length: 411 bp        

>NTDB_id=722152 NX810_RS13700 WP_009967785.1 2616031..2616441(-) (nucA/comI) [Bacillus subtilis strain SRCM117108]
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAGCAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGGGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGATAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACG
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCTGTCTGCGAGGAAGGCGGCGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGCACCAGAGTGCTGTTTA
TTGTGCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(40-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I4D881

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

62.609

84.559

0.529