Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   NX810_RS13170 Genome accession   NZ_CP103350
Coordinates   2522672..2523709 (-) Length   345 a.a.
NCBI ID   WP_029726718.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM117108     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2517672..2528709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX810_RS13120 (NX810_13120) tasA 2517769..2518554 (-) 786 WP_003230183.1 biofilm matrix protein TasA -
  NX810_RS13125 (NX810_13125) sipW 2518618..2519190 (-) 573 WP_003230181.1 signal peptidase I SipW -
  NX810_RS13130 (NX810_13130) tapA 2519174..2519935 (-) 762 WP_003230180.1 amyloid fiber anchoring/assembly protein TapA -
  NX810_RS13135 (NX810_13135) yqzG 2520207..2520533 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  NX810_RS13140 (NX810_13140) spoIITA 2520575..2520754 (-) 180 WP_029726723.1 YqzE family protein -
  NX810_RS13145 (NX810_13145) comGG 2520826..2521200 (-) 375 WP_029726722.1 ComG operon protein ComGG Machinery gene
  NX810_RS13150 (NX810_13150) comGF 2521201..2521584 (-) 384 WP_029726721.1 ComG operon protein ComGF Machinery gene
  NX810_RS13155 (NX810_13155) comGE 2521610..2521957 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  NX810_RS13160 (NX810_13160) comGD 2521941..2522372 (-) 432 WP_029726720.1 comG operon protein ComGD Machinery gene
  NX810_RS13165 (NX810_13165) comGC 2522362..2522658 (-) 297 WP_029726719.1 comG operon protein ComGC Machinery gene
  NX810_RS13170 (NX810_13170) comGB 2522672..2523709 (-) 1038 WP_029726718.1 comG operon protein ComGB Machinery gene
  NX810_RS13175 (NX810_13175) comGA 2523696..2524766 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  NX810_RS13180 (NX810_13180) - 2524979..2525176 (-) 198 WP_029726717.1 hypothetical protein -
  NX810_RS13185 (NX810_13185) corA 2525178..2526131 (-) 954 WP_004399136.1 magnesium transporter CorA -
  NX810_RS13190 (NX810_13190) yqhB 2526274..2527602 (+) 1329 WP_029726716.1 hemolysin family protein -
  NX810_RS13195 (NX810_13195) rsbRD 2527655..2528491 (-) 837 WP_003230149.1 RsbT co-antagonist protein RsbRD -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 39702.10 Da        Isoelectric Point: 9.6257

>NTDB_id=722146 NX810_RS13170 WP_029726718.1 2522672..2523709(-) (comGB) [Bacillus subtilis strain SRCM117108]
MKKIRKVWSLKDQARLLKRLGEMTAGGYTLLDGLRLMELQMNKRQAADLTDSVTCLREGAPFYQVLKSLSFHKEAVGICY
FAETHGELPASMIQSGELLERKIAQADQLKRVLRYPLFLIFTVAVMFYMLQSIIIPQFSGIYQSMNMETSRSTDILFAFF
QHIDLVIILLVLFTAGIGIYYWLVFKKKSPARQMLICIRIPLVGKLVKLFNSYFFSLQLSSLLKSGLSIYDSLNAFKHQT
FLPFYRCEAEQLIERLKAGESIESAICGSPFYETDLSKVISHGQLSGRLDRELFTYSQFILQRLEHKAQKWTGILQPMIY
GFVAAMILLVYLSMLVPMYQMMNQM

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=722146 NX810_RS13170 WP_029726718.1 2522672..2523709(-) (comGB) [Bacillus subtilis strain SRCM117108]
ATGAAAAAGATTAGAAAAGTCTGGTCGTTAAAGGATCAAGCGAGGTTATTAAAGAGGCTCGGTGAAATGACTGCGGGCGG
ATATACGCTTCTGGATGGATTACGCCTGATGGAACTTCAGATGAATAAGAGGCAGGCGGCTGACTTGACTGATTCGGTCA
CTTGTTTGAGGGAAGGGGCTCCGTTTTATCAAGTACTAAAGAGTTTGTCATTTCATAAGGAAGCCGTAGGTATTTGTTAT
TTTGCTGAAACACATGGTGAACTGCCTGCTTCCATGATCCAGAGCGGAGAGCTGCTGGAACGAAAAATTGCACAGGCAGA
CCAGCTGAAAAGAGTGCTGCGCTATCCGCTTTTCCTCATCTTTACGGTCGCTGTCATGTTTTATATGTTACAGTCCATCA
TCATTCCTCAGTTTTCCGGTATCTATCAATCGATGAATATGGAAACCTCACGTTCAACCGATATACTTTTTGCTTTTTTT
CAGCATATTGATCTTGTGATCATTTTGCTTGTTCTTTTTACAGCAGGTATCGGGATTTATTATTGGCTTGTGTTTAAGAA
AAAATCACCTGCCCGGCAAATGCTGATTTGTATCAGGATTCCTTTGGTTGGAAAGCTTGTCAAGCTGTTTAACAGCTACT
TTTTTTCTTTGCAGCTAAGCAGCCTTTTAAAATCAGGCCTCTCAATTTATGACAGCCTTAATGCATTTAAACATCAAACG
TTTCTCCCTTTCTACCGCTGCGAGGCTGAACAATTGATTGAACGGCTAAAAGCCGGTGAGTCAATTGAATCCGCTATTTG
TGGAAGCCCTTTTTATGAAACTGATTTATCAAAAGTCATATCTCACGGCCAGCTGAGCGGCCGATTGGATCGGGAGCTTT
TCACATACAGCCAATTCATATTACAGCGGCTGGAACACAAAGCGCAAAAATGGACAGGCATCCTTCAGCCAATGATTTAT
GGATTTGTTGCAGCGATGATCTTACTTGTGTATTTATCTATGCTTGTGCCTATGTATCAGATGATGAATCAAATGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(215-337)

Type II secretion system (T2SS), protein F (T2SSF)

(17-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Bacillus subtilis subsp. subtilis str. 168

99.381

93.623

0.93