Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   NX810_RS11120 Genome accession   NZ_CP103350
Coordinates   2173719..2174849 (+) Length   376 a.a.
NCBI ID   WP_046663334.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM117108     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2168719..2179849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX810_RS11090 (NX810_11090) - 2169378..2169650 (-) 273 WP_046663912.1 hypothetical protein -
  NX810_RS11095 (NX810_11095) - 2169815..2170516 (-) 702 WP_046663327.1 hypothetical protein -
  NX810_RS11100 (NX810_11100) - 2171164..2171529 (+) 366 WP_029318057.1 hypothetical protein -
  NX810_RS11105 (NX810_11105) - 2171710..2172006 (+) 297 Protein_2136 SOS response-associated peptidase -
  NX810_RS11110 (NX810_11110) - 2172270..2172644 (+) 375 WP_046663332.1 YoqO family protein -
  NX810_RS22290 (NX810_11115) - 2173494..2173586 (+) 93 Protein_2138 phage holin -
  NX810_RS11120 (NX810_11120) rapC 2173719..2174849 (+) 1131 WP_046663334.1 tetratricopeptide repeat protein Regulator
  NX810_RS11125 (NX810_11125) - 2174839..2174982 (+) 144 WP_153801665.1 hypothetical protein -
  NX810_RS11130 (NX810_11130) - 2175136..2175336 (-) 201 WP_021481449.1 hypothetical protein -
  NX810_RS11135 (NX810_11135) - 2175558..2175912 (-) 355 Protein_2142 UV damage repair protein UvrX -
  NX810_RS11140 (NX810_11140) - 2175910..2176064 (-) 155 Protein_2143 T7SS effector LXG polymorphic toxin -
  NX810_RS11145 (NX810_11145) - 2176152..2176718 (-) 567 WP_046663338.1 SMI1/KNR4 family protein -
  NX810_RS11150 (NX810_11150) aoxN 2176847..2178283 (+) 1437 WP_119899493.1 flavin monoamine oxidase family protein -
  NX810_RS11155 (NX810_11155) csaA 2178532..2178864 (-) 333 WP_029726834.1 chaperone CsaA -
  NX810_RS11160 (NX810_11160) yobQ 2178929..2179654 (-) 726 WP_072592544.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44392.26 Da        Isoelectric Point: 6.4230

>NTDB_id=722135 NX810_RS11120 WP_046663334.1 2173719..2174849(+) (rapC) [Bacillus subtilis strain SRCM117108]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEERPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYIKAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKKYDKAA
EYIEQAVSLYENDKSDLLPHTLFTLTQIYFKMKDIEKAFILYKKGIKKAQAINDDVLVAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=722135 NX810_RS11120 WP_046663334.1 2173719..2174849(+) (rapC) [Bacillus subtilis strain SRCM117108]
ATGGAGCAATTAATTCCGTCATCCACGGTTGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCTGAGATATTAAAAGCAGAAGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGTTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGAACGCCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGTCAAACAAAGCTTAAAGGTGTCCTGGAATATTACTGCAATTTCTTTAGAGGAAT
GTACGAATTTGATAAGAAGGATTATATAAAAGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ACGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCACTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCTTTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCGCATCTTCAAAGAGCATTAAAAGATTCGAAAGCTATAA
ACAAGCACAAACTAATTGGTGCATCGTTATATAATTTGGGGAACTGTTATTATAAGATGAAAAAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTCTCATTGTACGAAAACGATAAAAGTGACCTTCTCCCTCATACGTTATTTACACTGACACA
AATTTACTTCAAAATGAAGGATATTGAAAAAGCCTTTATTCTTTATAAAAAAGGAATCAAGAAAGCACAAGCCATTAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTAATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAAAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(221-287)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

50.798

100

0.508
  rapF Bacillus subtilis subsp. subtilis str. 168

45.119

100

0.455