Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   NX810_RS05610 Genome accession   NZ_CP103350
Coordinates   1086501..1087079 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM117108     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1081501..1092079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX810_RS22275 - 1082012..1082527 (-) 516 WP_326255844.1 methyl-accepting chemotaxis protein -
  NX810_RS22280 - 1082768..1083394 (-) 627 Protein_1035 protoglobin domain-containing protein -
  NX810_RS05595 (NX810_05595) comW 1083449..1084978 (-) 1530 WP_003245031.1 FAD-dependent oxidoreductase -
  NX810_RS05600 (NX810_05600) yhxC 1085090..1085947 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  NX810_RS05605 (NX810_05605) yhzC 1085975..1086208 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  NX810_RS05610 (NX810_05610) comK 1086501..1087079 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  NX810_RS05615 (NX810_05615) yhxD 1087126..1088025 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  NX810_RS05620 (NX810_05620) yhjA 1088242..1088511 (+) 270 WP_029726293.1 excalibur calcium-binding domain-containing protein -
  NX810_RS05625 (NX810_05625) yhjB 1088555..1090024 (-) 1470 WP_029726292.1 sodium:solute symporter -
  NX810_RS05630 (NX810_05630) yhjC 1090021..1090221 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  NX810_RS05635 (NX810_05635) - 1090429..1090791 (-) 363 WP_003233132.1 hypothetical protein -
  NX810_RS05640 (NX810_05640) yhjE 1090943..1091566 (+) 624 WP_010886465.1 TVP38/TMEM64 family protein -
  NX810_RS05645 (NX810_05645) lepB 1091568..1092074 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=722115 NX810_RS05610 WP_029317573.1 1086501..1087079(+) (comK) [Bacillus subtilis strain SRCM117108]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=722115 NX810_RS05610 WP_029317573.1 1086501..1087079(+) (comK) [Bacillus subtilis strain SRCM117108]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995