Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   NT399_RS15185 Genome accession   NZ_CP103338
Coordinates   3188651..3189535 (-) Length   294 a.a.
NCBI ID   WP_260784227.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB105     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3183651..3194535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NT399_RS15170 (NT399_15170) miaB 3185498..3186949 (+) 1452 WP_000218141.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  NT399_RS15175 (NT399_15175) - 3186987..3188075 (+) 1089 WP_000122983.1 PhoH family protein -
  NT399_RS15180 (NT399_15180) ybeY 3188085..3188561 (+) 477 WP_004833751.1 rRNA maturation RNase YbeY -
  NT399_RS15185 (NT399_15185) tonB2 3188651..3189535 (-) 885 WP_260784227.1 energy transducer TonB Machinery gene
  NT399_RS15190 (NT399_15190) - 3189766..3190437 (+) 672 WP_001193957.1 hypothetical protein -
  NT399_RS15195 (NT399_15195) - 3190595..3191308 (+) 714 WP_000201548.1 DUF3108 domain-containing protein -
  NT399_RS15200 (NT399_15200) - 3191381..3191956 (+) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  NT399_RS15205 (NT399_15205) wrbA 3192009..3192602 (-) 594 WP_002125540.1 NAD(P)H:quinone oxidoreductase -
  NT399_RS15210 (NT399_15210) - 3192890..3194137 (+) 1248 WP_000893466.1 YihY family inner membrane protein -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33569.44 Da        Isoelectric Point: 8.0683

>NTDB_id=722073 NT399_RS15185 WP_260784227.1 3188651..3189535(-) (tonB2) [Acinetobacter baumannii strain AB105]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHIFVLLIHFAMPAPSEQSTKEIAISIRPTEDVIKHADFLAQADQQGSGA
FREAHRMSSNSPAPMPSDASTGEAQLETLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGICAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDANMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=722073 NT399_RS15185 WP_260784227.1 3188651..3189535(-) (tonB2) [Acinetobacter baumannii strain AB105]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGCGCCGTCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCGTCCTACTGAAGATGTAATCAAGCATGCAGACTTTTTAGCTCAAGCCGATCAACAAGGTTCAGGGGCT
TTTCGGGAAGCTCATCGGATGTCGAGTAACTCTCCAGCGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCTAGA
AACTTTAGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAACAATTACAAAGTCAGTTTCAGGCAAAAGCTGCCATGGTAGCGAGT
CTTGAAGCTCAGTATTTACAACGTCAGCAAGATTTTAGTCGCCAACAAAAGATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCGTCAGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAGGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTTGTGCAATTCGTTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCGTTTGGCCGTTTTGA
TGCAAATATGAAAGATATTTCGGAACTTCGTATTATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

99.66

100

0.997