Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   NT399_RS02860 Genome accession   NZ_CP103338
Coordinates   612332..612742 (+) Length   136 a.a.
NCBI ID   WP_002125991.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB105     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 607332..617742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NT399_RS02845 (NT399_02845) - 608321..610627 (+) 2307 WP_002125975.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  NT399_RS02850 (NT399_02850) - 610672..611445 (-) 774 WP_002125966.1 SDR family oxidoreductase -
  NT399_RS02855 (NT399_02855) mazG 611557..612363 (+) 807 WP_000359488.1 nucleoside triphosphate pyrophosphohydrolase -
  NT399_RS02860 (NT399_02860) comEA 612332..612742 (+) 411 WP_002125991.1 ComEA family DNA-binding protein Machinery gene
  NT399_RS02865 (NT399_02865) pcnB 612867..614330 (+) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  NT399_RS02870 (NT399_02870) folK 614327..614809 (+) 483 WP_000219213.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  NT399_RS02875 (NT399_02875) panB 614855..615664 (+) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  NT399_RS02880 (NT399_02880) panC 615668..616516 (+) 849 WP_002125983.1 pantoate--beta-alanine ligase -
  NT399_RS02885 (NT399_02885) rapZ 616539..617390 (+) 852 WP_000821671.1 RNase adapter RapZ -
  NT399_RS02890 (NT399_02890) - 617387..617656 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15672.97 Da        Isoelectric Point: 10.4475

>NTDB_id=722059 NT399_RS02860 WP_002125991.1 612332..612742(+) (comEA) [Acinetobacter baumannii strain AB105]
MQYSMRFWKNKYFVLIMLCLGVISPSVYAQSFDKNFQEWKAKQQMYDQKLNISKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=722059 NT399_RS02860 WP_002125991.1 612332..612742(+) (comEA) [Acinetobacter baumannii strain AB105]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATGTTGTGCTTGGGGGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGACAAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCTCTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCCATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii D1279779

97.059

100

0.971
  comEA Acinetobacter baumannii strain A118

96.324

100

0.963
  comEA Acinetobacter baylyi ADP1

41.985

96.324

0.404