Detailed information    

insolico Bioinformatically predicted

Overview


Name   tsaP   Type   Machinery gene
Locus tag   NT399_RS00780 Genome accession   NZ_CP103338
Coordinates   159936..161090 (-) Length   384 a.a.
NCBI ID   WP_000755281.1    Uniprot ID   A0A059ZKS3
Organism   Acinetobacter baumannii strain AB105     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 154936..166090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NT399_RS00760 (NT399_00760) - 156096..156746 (+) 651 WP_012300783.1 TetR/AcrR family transcriptional regulator -
  NT399_RS00765 (NT399_00765) - 156852..157772 (+) 921 WP_000084546.1 DMT family transporter -
  NT399_RS00770 (NT399_00770) - 158165..158734 (-) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  NT399_RS00775 (NT399_00775) dprA 158785..159915 (-) 1131 WP_002124758.1 DNA-processing protein DprA Machinery gene
  NT399_RS00780 (NT399_00780) tsaP 159936..161090 (-) 1155 WP_000755281.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  NT399_RS00785 (NT399_00785) def 161213..161743 (+) 531 WP_001196539.1 peptide deformylase -
  NT399_RS00790 (NT399_00790) - 161780..162208 (+) 429 WP_000231983.1 DUF2946 family protein -
  NT399_RS00795 (NT399_00795) - 162281..164368 (+) 2088 WP_188198615.1 TonB-dependent copper receptor -
  NT399_RS00800 (NT399_00800) - 164422..164628 (+) 207 WP_000182542.1 hypothetical protein -
  NT399_RS00805 (NT399_00805) - 164698..165912 (-) 1215 WP_001177966.1 oxygenase MpaB family protein -

Sequence


Protein


Download         Length: 384 a.a.        Molecular weight: 42350.28 Da        Isoelectric Point: 8.5816

>NTDB_id=722045 NT399_RS00780 WP_000755281.1 159936..161090(-) (tsaP) [Acinetobacter baumannii strain AB105]
MKKVFNGMVNFHALGIKKHLLALALCTGVAIGTIAEVHATSPNHNPPSLKSNAPNVYVVKRGDTLWDISGHFLNKPWRWP
EIWASNQHVKNPHWIYPGDRLLLCSLDGRPLVGKDEGDGCVGIIRRYTGQTTNLQPQVRVEALNNSVPVIPLEHIKQWLE
NSTILPADSITNTPYIVGTADQRVLAGKGQTIYARGQGLINGQRYAVYREGEPYYFTDNKGKKHSLGIELLQVASGVAVS
SEKDITTLELTDSYNAEVRRGDRVMPEEQATLPTLFYPVDAKQVTDGGKIIRVMGSIGRAAKNSVVTLDRGTTQGIQVGQ
VFDITQQGESIRDPKTKEVIQLPGQQIGSLMVFRTFDQLSYAYVLESDLPIKVGSSIQPPQFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=722045 NT399_RS00780 WP_000755281.1 159936..161090(-) (tsaP) [Acinetobacter baumannii strain AB105]
ATGAAAAAGGTTTTTAACGGCATGGTTAATTTTCATGCCTTGGGGATAAAGAAGCATTTACTTGCTTTGGCGCTCTGTAC
AGGTGTCGCAATCGGTACGATAGCAGAGGTTCATGCAACCAGTCCGAACCATAATCCACCCTCCCTTAAAAGTAATGCAC
CCAATGTATATGTTGTAAAACGTGGGGATACTTTATGGGATATTTCAGGACATTTTCTAAATAAACCATGGCGTTGGCCT
GAAATCTGGGCGAGCAACCAACATGTTAAAAATCCACACTGGATCTATCCGGGTGACCGATTACTATTATGTAGCCTAGA
TGGGCGTCCTTTAGTCGGTAAAGATGAGGGCGATGGTTGTGTCGGTATTATTCGCCGCTATACAGGTCAAACCACAAACC
TACAACCACAAGTTCGCGTCGAAGCATTAAATAATAGCGTTCCGGTTATTCCACTTGAACATATTAAACAGTGGTTAGAG
AACAGTACTATTTTACCAGCCGACTCAATTACCAACACACCTTATATTGTTGGTACAGCCGATCAACGTGTACTTGCAGG
AAAAGGCCAGACTATTTATGCACGAGGACAAGGCTTAATTAATGGGCAGCGTTATGCAGTCTACCGAGAAGGTGAACCTT
ACTATTTCACAGACAATAAAGGTAAAAAGCATAGTTTAGGGATTGAGTTACTACAGGTTGCTTCAGGTGTTGCGGTCTCT
TCTGAAAAAGATATTACTACATTAGAACTAACAGATAGTTATAACGCTGAAGTACGTCGTGGCGATCGTGTTATGCCTGA
AGAGCAAGCTACTTTGCCAACATTATTTTACCCAGTAGATGCGAAGCAAGTGACGGATGGTGGCAAGATTATTCGTGTCA
TGGGTTCAATTGGTAGGGCTGCAAAAAATAGTGTAGTGACTTTGGACCGCGGTACAACCCAGGGTATTCAAGTAGGCCAA
GTTTTTGATATTACTCAACAAGGTGAATCAATTCGCGACCCTAAAACCAAAGAAGTAATTCAACTTCCTGGCCAACAAAT
TGGCAGTCTAATGGTTTTTAGAACTTTTGATCAGCTAAGTTATGCTTATGTCTTAGAGAGCGATTTACCAATTAAGGTTG
GTTCAAGCATTCAGCCACCTCAATTTAATGATTAA

Domains


Predicted by InterproScan.

(57-102)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A059ZKS3

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

99.479

100

0.995