Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   NT399_RS00775 Genome accession   NZ_CP103338
Coordinates   158785..159915 (-) Length   376 a.a.
NCBI ID   WP_002124758.1    Uniprot ID   A0A009QFQ7
Organism   Acinetobacter baumannii strain AB105     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 153785..164915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NT399_RS00750 (NT399_00750) - 153959..154723 (-) 765 WP_000786955.1 AraC family transcriptional regulator -
  NT399_RS00755 (NT399_00755) - 154745..155959 (-) 1215 WP_000372840.1 MFS transporter -
  NT399_RS00760 (NT399_00760) - 156096..156746 (+) 651 WP_012300783.1 TetR/AcrR family transcriptional regulator -
  NT399_RS00765 (NT399_00765) - 156852..157772 (+) 921 WP_000084546.1 DMT family transporter -
  NT399_RS00770 (NT399_00770) - 158165..158734 (-) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  NT399_RS00775 (NT399_00775) dprA 158785..159915 (-) 1131 WP_002124758.1 DNA-processing protein DprA Machinery gene
  NT399_RS00780 (NT399_00780) tsaP 159936..161090 (-) 1155 WP_000755281.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  NT399_RS00785 (NT399_00785) def 161213..161743 (+) 531 WP_001196539.1 peptide deformylase -
  NT399_RS00790 (NT399_00790) - 161780..162208 (+) 429 WP_000231983.1 DUF2946 family protein -
  NT399_RS00795 (NT399_00795) - 162281..164368 (+) 2088 WP_188198615.1 TonB-dependent copper receptor -
  NT399_RS00800 (NT399_00800) - 164422..164628 (+) 207 WP_000182542.1 hypothetical protein -

Sequence


Protein


Download         Length: 376 a.a.        Molecular weight: 41816.33 Da        Isoelectric Point: 6.6658

>NTDB_id=722044 NT399_RS00775 WP_002124758.1 158785..159915(-) (dprA) [Acinetobacter baumannii strain AB105]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGNCEKATQPDGLAKWSSLGLHANHLKRVNEFQTPQGQAQFEQLVQQV
RQHTDFILTAGDSGYPSQLLPYTDHPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFFISSGLAYG
IDEAAHQGASTHQRTIAVTGTGLDTTYPAQNKKLAEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILIDHPEQIIEDLALPTQWQSQQQNQTEEANTNTPEIP
EHLIDLYQSLDWVGQNIDQLVVHHNIPVSELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=722044 NT399_RS00775 WP_002124758.1 158785..159915(-) (dprA) [Acinetobacter baumannii strain AB105]
ATGCTCACTCAACTTTCTTCACACCACTACCACACACTTAAAGTGTGGTATTTGGTGCAGCATTCTTTAGTCAGCTTTAA
AAAAATTATTGATTATTTTGGAAATTGTGAAAAAGCCACTCAACCTGATGGTTTAGCAAAGTGGTCCTCTCTGGGGCTAC
ATGCTAATCACTTAAAGCGTGTAAACGAATTTCAAACGCCCCAAGGTCAGGCGCAGTTTGAACAACTTGTACAACAAGTT
CGTCAGCATACGGATTTTATTTTAACGGCAGGTGACTCAGGCTACCCCTCTCAATTACTTCCTTATACAGATCACCCACC
TATTATTTTTGGGAAAGGTCAAGCGCAAGCTTTATTGCAACCTCAGATTGCGATTGTCGGTAGCCGAAAACCAAGCCCAC
ATGGACGACAGGTCGCTTATGATTTTGCTTACTACTTAAGTGAAAAGGGCTTTTTCATTAGTAGTGGTCTGGCTTATGGC
ATTGATGAAGCCGCACATCAAGGTGCATCTACTCATCAACGTACCATTGCAGTGACGGGTACGGGCTTAGACACTACTTA
TCCAGCTCAAAATAAAAAACTTGCAGAACATATTTTGGCTCAAAACGGCGCCATTATTACTGAGTTTTTACCGGGTACAC
CGCCATTACAACAGCATTTTCCACGTAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTTTTGGTGGTAGAAGCGACA
TTAAAAAGTGGCTCACTCATCACGGCCAATAAAGCTGCTGAACAAGGTAAAACCGTATTCGCGATTCCGGGCCATATTTA
TAGCGAGTTTCATCAAGGATGCCATCAACTTATCCGTGAAGGTGCAATTTTAATCGACCATCCTGAACAGATTATTGAGG
ATCTTGCTTTACCAACCCAATGGCAAAGTCAGCAACAAAATCAAACTGAAGAAGCTAATACGAATACTCCAGAAATTCCT
GAGCATTTGATTGACCTTTATCAGTCTTTAGACTGGGTGGGACAAAATATTGACCAACTTGTAGTTCACCATAATATTCC
AGTTTCTGAACTGACCTCTTCACTAATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGGCTGTATTTACGTT
GTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A009QFQ7

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

98.404

100

0.984

  dprA Acinetobacter baumannii D1279779

98.138

100

0.981

  dprA Acinetobacter baylyi ADP1

70.341

100

0.713

  dprA Vibrio cholerae strain A1552

42.9

88.032

0.378