Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NX062_RS11105 Genome accession   NZ_CP103328
Coordinates   2092084..2092704 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain KC14-1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2087084..2097704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX062_RS11065 (NX062_11060) ptsA 2088215..2088721 (-) 507 WP_029726788.1 PTS glucose transporter subunit IIA -
  NX062_RS11070 (NX062_11065) ypqA 2088859..2089278 (+) 420 WP_042976351.1 Hsp20/alpha crystallin family protein -
  NX062_RS11075 (NX062_11070) sppG 2089299..2089676 (-) 378 WP_004398696.1 YppG family protein -
  NX062_RS11080 (NX062_11075) yppF 2089864..2090052 (+) 189 WP_003230690.1 YppF family protein -
  NX062_RS11085 (NX062_11080) yppE 2090091..2090462 (-) 372 WP_003246080.1 YppE family protein -
  NX062_RS11090 (NX062_11085) yppD 2090508..2090753 (-) 246 WP_004398488.1 YppD family protein -
  NX062_RS11095 (NX062_11090) sspM 2090952..2091056 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  NX062_RS11100 (NX062_11095) yppC 2091081..2092043 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  NX062_RS11105 (NX062_11100) recU 2092084..2092704 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  NX062_RS11110 (NX062_11105) ponA 2092726..2095470 (+) 2745 WP_046160510.1 transglycosylase domain-containing protein -
  NX062_RS11115 (NX062_11110) ypoC 2095546..2096040 (-) 495 WP_009967579.1 YpoC family protein -
  NX062_RS11120 (NX062_11115) nth 2096037..2096696 (-) 660 WP_009967580.1 endonuclease III -
  NX062_RS11125 (NX062_11120) dnaD 2096715..2097413 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=721979 NX062_RS11105 WP_004399067.1 2092084..2092704(+) (recU) [Bacillus subtilis strain KC14-1]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=721979 NX062_RS11105 WP_004399067.1 2092084..2092704(+) (recU) [Bacillus subtilis strain KC14-1]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1