Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NX062_RS07800 Genome accession   NZ_CP103328
Coordinates   1490414..1490692 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain KC14-1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1485414..1495692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX062_RS07780 (NX062_07780) panEB 1486602..1487513 (+) 912 WP_014479685.1 ketopantoate reductase family protein -
  NX062_RS07785 (NX062_07785) ampS 1487547..1488779 (-) 1233 WP_003232341.1 aminopeptidase -
  NX062_RS07790 (NX062_07790) ykpC 1488888..1489022 (-) 135 WP_003238865.1 protein YkpC -
  NX062_RS07795 (NX062_07795) mreBH 1489123..1490130 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  NX062_RS07800 (NX062_07800) abrB 1490414..1490692 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  NX062_RS07805 (NX062_07805) kinC 1490882..1492168 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  NX062_RS07810 (NX062_07810) ykqA 1492184..1493017 (+) 834 WP_014479687.1 gamma-glutamylcyclotransferase -
  NX062_RS07815 (NX062_07815) ktrC 1493080..1493745 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  NX062_RS07820 (NX062_07820) ade 1493900..1495633 (+) 1734 WP_003245362.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=721974 NX062_RS07800 WP_003244728.1 1490414..1490692(+) (abrB) [Bacillus subtilis strain KC14-1]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=721974 NX062_RS07800 WP_003244728.1 1490414..1490692(+) (abrB) [Bacillus subtilis strain KC14-1]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576