Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   NX062_RS05640 Genome accession   NZ_CP103328
Coordinates   1092740..1093318 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain KC14-1     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1087740..1098318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX062_RS20730 - 1088251..1088766 (-) 516 WP_326255844.1 methyl-accepting chemotaxis protein -
  NX062_RS20735 - 1089007..1089633 (-) 627 Protein_1044 protoglobin domain-containing protein -
  NX062_RS05625 (NX062_05625) comW 1089688..1091217 (-) 1530 WP_019712353.1 FAD-dependent oxidoreductase -
  NX062_RS05630 (NX062_05630) yhxC 1091329..1092186 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  NX062_RS05635 (NX062_05635) yhzC 1092214..1092447 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  NX062_RS05640 (NX062_05640) comK 1092740..1093318 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  NX062_RS05645 (NX062_05645) yhxD 1093365..1094264 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  NX062_RS05650 (NX062_05650) yhjA 1094481..1094750 (+) 270 WP_029726293.1 excalibur calcium-binding domain-containing protein -
  NX062_RS05655 (NX062_05655) yhjB 1094794..1096263 (-) 1470 WP_029726292.1 sodium:solute symporter -
  NX062_RS05660 (NX062_05660) yhjC 1096260..1096460 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  NX062_RS05665 (NX062_05665) - 1096668..1097030 (-) 363 WP_003233132.1 hypothetical protein -
  NX062_RS05670 (NX062_05670) yhjE 1097182..1097805 (+) 624 WP_010886465.1 TVP38/TMEM64 family protein -
  NX062_RS05675 (NX062_05675) lepB 1097807..1098313 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=721960 NX062_RS05640 WP_029317573.1 1092740..1093318(+) (comK) [Bacillus subtilis strain KC14-1]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=721960 NX062_RS05640 WP_029317573.1 1092740..1093318(+) (comK) [Bacillus subtilis strain KC14-1]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995