Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   NX062_RS03710 Genome accession   NZ_CP103328
Coordinates   724693..724920 (-) Length   75 a.a.
NCBI ID   WP_284691249.1    Uniprot ID   -
Organism   Bacillus subtilis strain KC14-1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 717125..727404 724693..724920 within 0


Gene organization within MGE regions


Location: 717125..727404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX062_RS03675 (NX062_03675) - 717125..718165 (+) 1041 WP_206734711.1 hypothetical protein -
  NX062_RS03680 (NX062_03680) - 718166..718993 (+) 828 WP_200897643.1 helix-turn-helix transcriptional regulator -
  NX062_RS03685 (NX062_03685) - 719454..720287 (+) 834 WP_164907151.1 AbiJ-NTD4 domain-containing protein -
  NX062_RS03690 (NX062_03690) - 720583..722022 (+) 1440 WP_129110460.1 hypothetical protein -
  NX062_RS03695 (NX062_03695) - 722019..723119 (+) 1101 WP_129110461.1 hypothetical protein -
  NX062_RS03700 (NX062_03700) - 723599..723796 (-) 198 WP_129110462.1 hypothetical protein -
  NX062_RS03705 - 723786..724469 (-) 684 WP_284691248.1 tetratricopeptide repeat protein -
  NX062_RS03710 rapC 724693..724920 (-) 228 WP_284691249.1 hypothetical protein Regulator
  NX062_RS03715 (NX062_03710) - 725101..725405 (-) 305 Protein_680 hypothetical protein -
  NX062_RS03720 (NX062_03715) yezA 725472..725678 (-) 207 WP_129110463.1 bacteriocin immunity protein -
  NX062_RS03725 (NX062_03720) - 725922..726392 (-) 471 WP_262091302.1 TIGR01741 family protein -
  NX062_RS03730 (NX062_03725) - 726471..726941 (-) 471 WP_129110464.1 immunity protein YezG family protein -
  NX062_RS03735 (NX062_03730) - 726931..727404 (-) 474 WP_129110465.1 antitoxin YezG family protein -

Sequence

Protein


Download         Length: 75 a.a.        Molecular weight: 8912.11 Da        Isoelectric Point: 4.2933

>NTDB_id=721954 NX062_RS03710 WP_284691249.1 724693..724920(-) (rapC) [Bacillus subtilis strain KC14-1]
MRSLGTISSPHVGMEINEWNRHIQKFNVTDAEMLKTEIERDIDIMEEDQDLLLYYQLISFRHQLMIDYVIPSEGN

Nucleotide


Download         Length: 228 bp        

>NTDB_id=721954 NX062_RS03710 WP_284691249.1 724693..724920(-) (rapC) [Bacillus subtilis strain KC14-1]
GTGAGGAGTTTAGGCACGATTTCGTCTCCGCACGTTGGAATGGAAATTAATGAGTGGAACCGGCATATTCAAAAGTTTAA
TGTGACTGACGCTGAAATGCTTAAAACTGAGATCGAACGGGACATTGACATCATGGAAGAAGACCAAGACCTCCTGCTTT
ACTATCAGCTCATTTCATTTCGCCATCAGCTTATGATCGACTATGTGATTCCATCTGAAGGAAACTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

54.795

97.333

0.533
  rapF Bacillus subtilis subsp. subtilis str. 168

53.623

92

0.493