Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   PVK53_RS01155 Genome accession   NZ_CP118308
Coordinates   207029..207478 (+) Length   149 a.a.
NCBI ID   WP_397611636.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 20203206     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 202029..212478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVK53_RS01135 (PVK53_01125) - 202555..203688 (+) 1134 WP_032461542.1 ISAs1-like element IS1548 family transposase -
  PVK53_RS01140 (PVK53_01130) - 204013..204684 (+) 672 WP_002991199.1 rhomboid family intramembrane serine protease -
  PVK53_RS01145 (PVK53_01135) galU 204783..205682 (-) 900 WP_002986125.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  PVK53_RS01150 (PVK53_01140) - 205715..206731 (-) 1017 WP_002986123.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  PVK53_RS01155 (PVK53_01145) rcrR 207029..207478 (+) 450 WP_397611636.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  PVK53_RS01160 (PVK53_01150) - 207471..209177 (+) 1707 WP_002991196.1 ABC transporter ATP-binding protein -
  PVK53_RS01165 (PVK53_01155) - 209180..210964 (+) 1785 WP_002986115.1 ABC transporter ATP-binding protein -
  PVK53_RS01170 (PVK53_01160) - 211082..211849 (+) 768 WP_002986113.1 epoxyqueuosine reductase QueH -
  PVK53_RS01175 (PVK53_01165) - 211959..212405 (+) 447 WP_002986111.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17373.28 Da        Isoelectric Point: 9.5568

>NTDB_id=721797 PVK53_RS01155 WP_397611636.1 207029..207478(+) (rcrR) [Streptococcus pyogenes strain 20203206]
MSQVIGDLRELIHQIEQISDEIAKKYDVEHLAGPQSYVLVFLAKHQNQEIFVKDIEKQLRISKSVASHLVKRMVKNGFIN
VMPSQVDKRYKQVVLAQVGRDKLPLLRECRKDIEHYFLKEITKEELLTAKKVIEQLKQNMLTYKGDNDA

Nucleotide


Download         Length: 450 bp        

>NTDB_id=721797 PVK53_RS01155 WP_397611636.1 207029..207478(+) (rcrR) [Streptococcus pyogenes strain 20203206]
ATGTCACAAGTGATAGGTGATTTACGTGAATTGATACATCAAATCGAACAAATTAGTGATGAGATTGCAAAAAAATATGA
TGTAGAGCATCTAGCAGGTCCTCAAAGTTATGTTCTTGTTTTTTTAGCTAAACACCAAAATCAAGAAATATTTGTCAAAG
ATATTGAAAAACAACTTCGTATCTCAAAGTCAGTTGCTAGTCATTTAGTGAAACGTATGGTCAAAAATGGGTTTATCAAT
GTGATGCCTTCCCAAGTGGATAAGCGTTATAAGCAAGTAGTGTTAGCGCAGGTTGGTAGAGATAAATTGCCTTTGTTGCG
GGAGTGTCGTAAGGATATCGAGCACTATTTTTTAAAAGAAATTACAAAAGAAGAGTTGCTGACAGCGAAAAAAGTAATTG
AACAGCTCAAGCAAAATATGCTAACTTATAAAGGAGACAACGATGCTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

46.429

93.96

0.436