Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NW892_RS09995 Genome accession   NZ_CP103295
Coordinates   2103122..2103751 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 2e     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2098122..2108751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW892_RS09975 (NW892_09975) ycbZ 2098511..2100271 (-) 1761 WP_000156526.1 Lon protease family protein -
  NW892_RS09980 (NW892_09980) matP 2100457..2100909 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  NW892_RS09985 (NW892_09985) ompA 2100985..2102037 (-) 1053 WP_001361736.1 porin OmpA -
  NW892_RS09990 (NW892_09990) sulA 2102394..2102903 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  NW892_RS09995 (NW892_09995) sxy/tfoX 2103122..2103751 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  NW892_RS10000 (NW892_10000) yccS 2103714..2105876 (-) 2163 WP_000875023.1 YccS family putative transporter -
  NW892_RS10005 (NW892_10005) yccF 2105886..2106332 (-) 447 WP_001261235.1 YccF domain-containing protein -
  NW892_RS10010 (NW892_10010) helD 2106455..2108509 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=721795 NW892_RS09995 WP_000839153.1 2103122..2103751(+) (sxy/tfoX) [Escherichia coli strain 2e]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=721795 NW892_RS09995 WP_000839153.1 2103122..2103751(+) (sxy/tfoX) [Escherichia coli strain 2e]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1