Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   PVK48_RS06955 Genome accession   NZ_CP118307
Coordinates   1357361..1357969 (+) Length   202 a.a.
NCBI ID   WP_002983622.1    Uniprot ID   P65998
Organism   Streptococcus pyogenes strain 20200554     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1352361..1362969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVK48_RS06925 (PVK48_06870) - 1352607..1353089 (+) 483 WP_002988938.1 S-ribosylhomocysteine lyase -
  PVK48_RS06930 (PVK48_06875) - 1353235..1354704 (-) 1470 WP_002988934.1 cell division site-positioning protein MapZ family protein -
  PVK48_RS06935 (PVK48_06880) - 1354718..1355872 (-) 1155 WP_002988932.1 class I SAM-dependent RNA methyltransferase -
  PVK48_RS06945 (PVK48_06890) gpsB 1356317..1356643 (-) 327 WP_002983626.1 cell division regulator GpsB -
  PVK48_RS06950 (PVK48_06895) - 1356765..1357280 (-) 516 WP_002988930.1 DUF1273 domain-containing protein -
  PVK48_RS06955 (PVK48_06900) recU 1357361..1357969 (+) 609 WP_002983622.1 Holliday junction resolvase RecU Machinery gene
  PVK48_RS06960 (PVK48_06905) pbp1a 1357956..1360121 (+) 2166 WP_011285057.1 penicillin-binding protein PBP1A -
  PVK48_RS06965 (PVK48_06910) pepC 1360585..1361922 (-) 1338 WP_002988925.1 aminopeptidase C -
  PVK48_RS06970 (PVK48_06915) nadE 1362107..1362931 (-) 825 WP_002988923.1 ammonia-dependent NAD(+) synthetase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23356.93 Da        Isoelectric Point: 9.8725

>NTDB_id=721754 PVK48_RS06955 WP_002983622.1 1357361..1357969(+) (recU) [Streptococcus pyogenes strain 20200554]
MVNYPHNLIRQKVSSVQKQTKQNKVDFANRGMSFEAAINATNDYYLSRQIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYF
RQASTTDYCGVYKGHYVDFEAKETRQKTAMPMKNFHLHQIEHMACVLHQKGICFVLLHFSTLKETYYLPAQALISFYQID
NGSKSMPIDYIRKNGFKVAFGAFPQVPYLNIIEQNFLGGDYN

Nucleotide


Download         Length: 609 bp        

>NTDB_id=721754 PVK48_RS06955 WP_002983622.1 1357361..1357969(+) (recU) [Streptococcus pyogenes strain 20200554]
ATGGTTAATTATCCTCATAATCTTATTCGACAAAAAGTAAGTTCCGTTCAAAAGCAAACAAAGCAAAATAAGGTGGACTT
CGCCAATAGAGGTATGTCCTTTGAAGCTGCTATCAACGCGACAAATGATTATTATTTATCTCGTCAAATAGCTGTCATTC
ACAAAAAACCTACTCCTGTCCAAATTGTCAAAGTGGATTACCCTAAACGCAGTCGGGCAAAAATCGTTGAAGCGTACTTT
AGACAAGCTTCAACGACTGACTATTGCGGCGTTTATAAAGGACATTATGTTGATTTTGAAGCAAAAGAAACCAGGCAAAA
AACAGCTATGCCCATGAAAAATTTCCATTTACATCAGATTGAACATATGGCTTGCGTTTTACATCAAAAAGGAATCTGCT
TTGTCCTTCTTCACTTTTCCACACTGAAGGAGACTTACTACCTACCTGCTCAAGCCTTGATTTCATTTTATCAGATAGAT
AATGGCAGTAAATCGATGCCCATTGATTATATCAGAAAAAATGGCTTTAAGGTAGCATTTGGAGCCTTTCCACAAGTCCC
TTATTTAAACATAATTGAACAAAATTTTTTAGGCGGTGATTACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(30-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65998

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

51.269

97.525

0.5