Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   PVK48_RS06275 Genome accession   NZ_CP118307
Coordinates   1217249..1218910 (-) Length   553 a.a.
NCBI ID   WP_346393459.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 20200554     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1212249..1223910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVK48_RS06250 (PVK48_06190) - 1213307..1213582 (-) 276 WP_002983920.1 HU family DNA-binding protein -
  PVK48_RS06255 (PVK48_06195) - 1213681..1214268 (-) 588 WP_002989129.1 YpmS family protein -
  PVK48_RS06260 (PVK48_06200) - 1214246..1215088 (-) 843 WP_024623416.1 SGNH/GDSL hydrolase family protein -
  PVK48_RS06265 (PVK48_06205) - 1215081..1215920 (-) 840 WP_002989125.1 DegV family protein -
  PVK48_RS06270 (PVK48_06210) - 1216148..1217077 (-) 930 WP_002989123.1 LPXTG cell wall anchor domain-containing protein -
  PVK48_RS06275 (PVK48_06215) recN 1217249..1218910 (-) 1662 WP_346393459.1 DNA repair protein RecN Machinery gene
  PVK48_RS06280 (PVK48_06220) - 1218931..1219401 (-) 471 WP_002983907.1 arginine repressor -
  PVK48_RS06285 (PVK48_06225) - 1219388..1220215 (-) 828 WP_397610654.1 TlyA family RNA methyltransferase -
  PVK48_RS06290 (PVK48_06230) - 1220208..1221080 (-) 873 WP_397610653.1 polyprenyl synthetase family protein -
  PVK48_RS06295 (PVK48_06235) - 1221080..1221295 (-) 216 WP_002983901.1 exodeoxyribonuclease VII small subunit -
  PVK48_RS06300 (PVK48_06240) xseA 1221273..1222613 (-) 1341 WP_002989115.1 exodeoxyribonuclease VII large subunit -
  PVK48_RS06305 (PVK48_06245) - 1222766..1223620 (-) 855 WP_002989114.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62186.39 Da        Isoelectric Point: 4.6344

>NTDB_id=721745 PVK48_RS06275 WP_346393459.1 1217249..1218910(-) (recN) [Streptococcus pyogenes strain 20200554]
MLLEISIKNFAIIDEISLNFENGMTVLTGETGAGKSIIIDAMNMMLGARASTEVIRRGANKAEIEGFFSVDATPELVACL
ESSGIAMEEELIIRRDIFANGRSVSRINGQMVNLATLKQVGQFLVDIHGQHDQEELMRPQLHQQILDAFGDKAFEQLKEN
YQLIFDRYKSLRRQVIDKQKNEKEHKDRIDMLAFQIAEIEAAALSRGEDDRLNQERDRLMNHKQIADTLTNAYVMLDNDD
FSSLSNIRSSMNDLLSIEQFDSEYKGMSTSISEAYYILEEVSKQLSDTIDQLDFDGGRLQEIEFRLDTLNSLTRKYGGNV
NDVLDYYDNIIKEYQLLTGDDLSSGDLEAELKSLEKQLVAAASKLSVSRHQLAEQLEAEIKAELKELYMEKADFKVHFTT
SKFNRDGNESLEFYISTNPGEGFKPLVKVASGGELSRLMLAIKAAISRKEDKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
RHGQVLAISHLPQVIAIADYQYFISKESKEESTVSKVRLLTPEERVEEIASMIAGTDMTQAALTQARELLAKH

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=721745 PVK48_RS06275 WP_346393459.1 1217249..1218910(-) (recN) [Streptococcus pyogenes strain 20200554]
ATGTTATTAGAAATTTCCATTAAAAATTTTGCTATTATTGATGAAATTTCCCTAAATTTTGAAAATGGTATGACGGTTTT
GACGGGTGAAACTGGAGCAGGAAAGTCTATTATCATTGATGCTATGAATATGATGCTTGGTGCGCGTGCTAGTACAGAAG
TGATTCGTCGTGGAGCTAATAAAGCAGAAATTGAGGGGTTCTTTTCGGTAGATGCTACCCCAGAACTGGTTGCGTGTCTG
GAATCATCAGGTATTGCTATGGAAGAAGAACTGATTATTCGCCGGGATATCTTTGCCAATGGCAGAAGCGTGAGCCGCAT
TAATGGTCAGATGGTTAACCTAGCCACCTTAAAACAGGTCGGACAGTTTTTGGTAGATATTCATGGGCAACATGACCAAG
AAGAATTAATGCGACCACAGCTCCACCAGCAAATTTTGGACGCTTTTGGTGATAAGGCTTTTGAGCAATTGAAAGAGAAC
TATCAGCTTATTTTTGATCGTTATAAAAGCTTGCGTCGCCAGGTTATTGACAAACAAAAAAATGAAAAAGAACATAAAGA
TCGTATCGACATGTTGGCTTTTCAGATAGCGGAGATTGAAGCTGCTGCCTTGAGTCGAGGTGAGGACGACCGGTTAAATC
AAGAACGTGATCGCTTAATGAACCACAAACAAATTGCTGATACCCTGACCAATGCCTACGTCATGCTAGATAATGACGAT
TTTTCAAGTCTATCCAATATTCGCTCTAGCATGAATGACTTACTATCAATTGAGCAGTTTGATTCAGAGTACAAAGGGAT
GTCGACTTCGATTTCTGAAGCCTATTATATTCTTGAAGAAGTGAGCAAGCAATTATCAGATACCATTGACCAACTGGATT
TTGATGGTGGGCGATTACAGGAAATTGAATTTCGCTTGGATACACTCAATAGCTTAACCCGTAAATACGGTGGTAATGTG
AATGATGTGCTTGACTACTACGATAATATTATCAAAGAATACCAGCTATTAACAGGAGATGACTTGTCTTCAGGGGATCT
AGAGGCAGAATTGAAAAGCTTGGAAAAACAATTGGTTGCTGCTGCTTCGAAGTTAAGTGTCTCTCGCCATCAATTGGCGG
AGCAATTAGAAGCTGAGATTAAAGCTGAACTTAAGGAACTTTATATGGAAAAAGCAGATTTCAAAGTTCACTTTACCACA
TCAAAATTCAATCGTGATGGTAATGAAAGCTTGGAATTTTACATCTCTACTAATCCAGGCGAAGGATTCAAGCCCCTTGT
CAAGGTGGCTTCTGGAGGAGAGTTATCACGCCTTATGTTAGCCATCAAGGCTGCTATTTCTAGAAAAGAAGATAAGACGA
GTATTGTTTTTGATGAAGTAGATACAGGTGTTTCTGGTCGCGTTGCGCAAGCCATTGCCCAAAAAATTTATAAAATTGGG
CGACATGGGCAAGTTCTCGCTATTTCACACTTACCTCAAGTTATTGCTATTGCTGATTATCAGTATTTTATTTCTAAAGA
AAGTAAAGAAGAGTCCACCGTTTCTAAGGTAAGGTTATTAACTCCTGAAGAACGTGTGGAAGAAATTGCTAGCATGATTG
CAGGAACAGATATGACACAAGCTGCTCTTACGCAGGCTCGTGAACTACTTGCCAAACATTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

44.014

100

0.452