Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NWE71_RS16625 Genome accession   NZ_CP103291
Coordinates   3473564..3475279 (-) Length   571 a.a.
NCBI ID   WP_258831406.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain NS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3468564..3480279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NWE71_RS16605 - 3469563..3469799 (+) 237 WP_034308264.1 DUF2627 domain-containing protein -
  NWE71_RS16610 - 3469838..3470593 (-) 756 WP_258831404.1 glycerophosphodiester phosphodiesterase -
  NWE71_RS16615 spo0A 3470987..3471778 (-) 792 WP_034308269.1 sporulation transcription factor Spo0A -
  NWE71_RS16620 spoIVB 3472110..3473402 (-) 1293 WP_258831405.1 SpoIVB peptidase -
  NWE71_RS16625 recN 3473564..3475279 (-) 1716 WP_258831406.1 DNA repair protein RecN Machinery gene
  NWE71_RS16630 ahrC 3475302..3475751 (-) 450 WP_034308279.1 transcriptional regulator AhrC/ArgR -
  NWE71_RS16635 - 3476071..3476898 (-) 828 WP_034308281.1 TlyA family RNA methyltransferase -
  NWE71_RS16640 dxs 3476903..3478795 (-) 1893 WP_048681832.1 1-deoxy-D-xylulose-5-phosphate synthase -
  NWE71_RS16645 - 3479045..3479938 (-) 894 WP_258831407.1 polyprenyl synthetase family protein -
  NWE71_RS16650 - 3479940..3480173 (-) 234 WP_034308286.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 571 a.a.        Molecular weight: 64483.40 Da        Isoelectric Point: 5.2858

>NTDB_id=721728 NWE71_RS16625 WP_258831406.1 3473564..3475279(-) (recN) [Peribacillus frigoritolerans strain NS1]
MLTELSIRNFAIIDSLSVSFEKGLTVLTGETGAGKSIIIDAVHLLVGGRGSAEFIRHGESKAEIEGLFQIEDEKHPVFAK
AEEFGLDMNDGMAILRRDISQSGKSVCRVNGKLVTISTLREIGRTLIDIHGQHEHQELMDERLHLPLLDQFGGEKIASAL
TEYQKLYKRYETASKQLNGLSQNEQQMVHRLDLIQFQFDEIQKADLKLREDEELMEERKKINNFEKIHEALQTSYNALNG
EQHAIDWLSVAMNNLEEAAGLDEGLKHSSETVSNSYFLLEEAVSNIRDQLDSLDYDTERVEFIESRLNEINQLKRKYGRT
IEEILEYGAAIEEEVEKLQNRETHIAKLEKEMKSIKADLIVEAKNLSELRQKFAQQLTKKIHQELKDLYMEKTIFEPHFL
QTAYTFDELSDKGINQSGLDSMEFYISTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGITSIIFDEVDTGVSGRVA
QSIAEKIYKVATGSQVLCISHLPQVAAMADTHLFIAKNVRAGRTNTSVKPLIETEKIKEIGRMISGVEITDLTKQHANEL
IQLAKRLKITS

Nucleotide


Download         Length: 1716 bp        

>NTDB_id=721728 NWE71_RS16625 WP_258831406.1 3473564..3475279(-) (recN) [Peribacillus frigoritolerans strain NS1]
TTGTTAACAGAACTATCGATTAGGAATTTTGCGATCATAGACAGCCTGTCCGTTTCATTTGAGAAAGGCTTGACGGTCTT
GACAGGAGAAACAGGGGCAGGGAAGTCAATCATAATAGATGCCGTTCATCTCTTGGTTGGGGGACGTGGTTCTGCAGAGT
TCATTCGGCATGGTGAGTCGAAGGCTGAAATAGAAGGATTATTCCAAATTGAAGATGAAAAACACCCGGTCTTTGCCAAA
GCGGAAGAGTTTGGCCTGGATATGAATGATGGGATGGCGATACTTCGAAGGGATATCTCACAGAGCGGTAAAAGCGTTTG
CAGGGTAAATGGGAAGCTAGTAACGATTTCCACTTTACGTGAGATAGGGCGAACATTGATAGACATCCATGGTCAGCATG
AACATCAGGAATTAATGGATGAACGACTCCATCTTCCGCTGCTCGATCAATTCGGCGGTGAAAAAATCGCATCTGCACTC
ACTGAATACCAAAAGCTATATAAACGTTATGAAACCGCTTCTAAACAATTGAACGGTTTGAGCCAAAATGAACAGCAAAT
GGTCCACCGCCTTGATCTGATCCAGTTTCAATTCGATGAAATCCAAAAAGCCGATTTGAAATTACGCGAAGATGAAGAAT
TGATGGAAGAACGGAAGAAAATTAATAATTTCGAAAAAATCCATGAAGCGCTGCAAACCAGTTATAATGCTTTAAATGGT
GAGCAGCATGCAATTGATTGGCTTTCCGTAGCCATGAATAATTTGGAGGAAGCGGCAGGGCTTGATGAAGGTTTAAAGCA
CAGCTCTGAAACCGTTTCAAATAGCTACTTCCTGCTCGAAGAGGCTGTGTCAAACATCCGGGATCAATTGGACTCTTTGG
ATTATGATACAGAACGTGTGGAATTCATTGAAAGTCGACTTAATGAAATAAATCAATTAAAGCGTAAATATGGGCGGACC
ATCGAGGAAATCCTGGAATATGGGGCAGCAATTGAAGAAGAAGTCGAAAAGCTGCAAAATAGGGAAACCCATATCGCGAA
GCTTGAAAAGGAAATGAAATCCATCAAGGCAGATCTTATCGTCGAAGCAAAGAATCTGTCTGAACTTCGCCAGAAATTCG
CTCAGCAGCTAACCAAAAAGATTCATCAGGAATTAAAGGATTTATATATGGAAAAAACAATTTTCGAACCTCATTTCCTT
CAGACAGCCTATACTTTCGATGAATTGTCAGATAAGGGCATTAATCAGTCAGGGCTGGATTCAATGGAATTTTATATTTC
CACCAATCCAGGTGAACCGTTAAAACCTCTTTCTAAAATCGCATCTGGTGGAGAACTGTCGAGGATCATGCTGGCTTTGA
AAAGCATTTTCTCCAAGCATCAAGGCATAACGTCCATTATATTTGATGAAGTGGATACAGGTGTGAGCGGACGGGTTGCA
CAATCCATTGCCGAAAAGATCTATAAAGTGGCAACTGGATCACAAGTATTGTGCATATCCCATTTGCCACAGGTGGCAGC
CATGGCGGATACTCACCTTTTCATAGCGAAAAATGTAAGGGCAGGACGCACGAATACCTCGGTCAAGCCGCTAATTGAAA
CTGAAAAAATAAAAGAAATTGGCAGGATGATTTCGGGAGTAGAGATTACGGACTTGACGAAACAACATGCCAATGAATTA
ATCCAGCTGGCCAAAAGGCTGAAGATTACATCTTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.764

100

0.613