Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   NWE71_RS15005 Genome accession   NZ_CP103291
Coordinates   3138764..3139402 (-) Length   212 a.a.
NCBI ID   WP_258831245.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain NS1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3133764..3144402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NWE71_RS14995 - 3135488..3137011 (+) 1524 WP_258831243.1 L-lactate permease -
  NWE71_RS15000 - 3137271..3137891 (-) 621 WP_258831244.1 recombinase family protein -
  NWE71_RS15005 endA 3138764..3139402 (-) 639 WP_258831245.1 endonuclease I family protein Machinery gene
  NWE71_RS15010 - 3139573..3140535 (-) 963 WP_258831246.1 S8 family peptidase -
  NWE71_RS15015 - 3140908..3141453 (-) 546 WP_258831247.1 alkaline phosphatase family protein -
  NWE71_RS15020 - 3141754..3142269 (+) 516 WP_258831248.1 undecaprenyl-diphosphatase -
  NWE71_RS15025 - 3142411..3142647 (-) 237 WP_258834030.1 hypothetical protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 24642.06 Da        Isoelectric Point: 6.5688

>NTDB_id=721725 NWE71_RS15005 WP_258831245.1 3138764..3139402(-) (endA) [Peribacillus frigoritolerans strain NS1]
MLEKTHTDQLNYSPHRYVYPWVDLQENGSLKSLYSGKGMNPLSVIEEDVRLHEMQAKGLIGIFSEYLLNCEHVVPQSWFE
KKEPMRGDLHHLFACEPTCNSSRSNHPYYDFHDYVPEGQILGIKGGCGKAEESKFEPEYGKGIVARATLYFLIRYPKTIK
KELENVSLLLEWHQTFPVSIYEKHRNLAIHELQGNRNPFIDFPESIVTIEKK

Nucleotide


Download         Length: 639 bp        

>NTDB_id=721725 NWE71_RS15005 WP_258831245.1 3138764..3139402(-) (endA) [Peribacillus frigoritolerans strain NS1]
TTGCTTGAAAAAACACATACAGATCAGTTAAACTACAGCCCACATCGTTATGTGTACCCTTGGGTTGATTTGCAGGAAAA
CGGTTCATTAAAAAGCCTTTATTCTGGAAAAGGGATGAATCCACTTTCTGTCATAGAGGAGGACGTTCGGCTCCATGAAA
TGCAGGCAAAAGGGTTAATCGGCATCTTCTCAGAATATCTATTAAACTGTGAGCATGTAGTTCCTCAATCATGGTTCGAA
AAAAAAGAACCGATGAGAGGAGACTTGCATCATCTATTTGCCTGCGAACCCACCTGCAATAGTAGTCGCAGCAATCATCC
TTACTATGATTTTCACGATTATGTCCCTGAAGGACAGATTCTAGGAATCAAAGGTGGCTGCGGCAAGGCTGAAGAAAGTA
AATTCGAACCAGAATATGGCAAAGGAATCGTTGCCAGAGCAACACTCTATTTCCTAATTCGCTATCCAAAAACAATAAAG
AAAGAACTAGAGAATGTCTCTTTATTGCTAGAATGGCATCAAACATTTCCGGTATCCATCTATGAAAAACATCGCAACCT
AGCCATCCATGAACTTCAAGGCAATCGGAACCCATTTATTGATTTTCCAGAGAGTATTGTGACCATAGAAAAGAAGTGA

Domains

Predicted by InterProScan.

Endonuclease I (Endonuclease_1)

(17-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50

100

0.5