Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   NXY85_RS20940 Genome accession   NZ_CP103290
Coordinates   4169255..4170046 (+) Length   263 a.a.
NCBI ID   WP_004430590.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain NS2     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 4164255..4175046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NXY85_RS20910 - 4165100..4166113 (+) 1014 WP_258729904.1 iron ABC transporter permease -
  NXY85_RS20915 - 4166230..4167110 (+) 881 Protein_4103 PhzF family phenazine biosynthesis isomerase -
  NXY85_RS20920 - 4167191..4167775 (+) 585 WP_258728849.1 nitroreductase -
  NXY85_RS20925 - 4167815..4168006 (-) 192 WP_004430587.1 YfhD family protein -
  NXY85_RS20930 - 4168084..4168194 (-) 111 WP_003223230.1 YfhE family protein -
  NXY85_RS20935 - 4168253..4169164 (-) 912 WP_258728850.1 TIGR01777 family oxidoreductase -
  NXY85_RS20940 recX 4169255..4170046 (+) 792 WP_004430590.1 recombination regulator RecX Regulator
  NXY85_RS20945 - 4170054..4170380 (+) 327 WP_010788005.1 YfhH family protein -
  NXY85_RS20950 - 4170517..4171716 (+) 1200 WP_094231665.1 MFS transporter -
  NXY85_RS20955 - 4171757..4171909 (-) 153 WP_004430596.1 small, acid-soluble spore protein K -
  NXY85_RS20960 - 4172026..4172295 (+) 270 WP_004430597.1 YfhJ family protein -
  NXY85_RS20965 - 4172423..4172959 (+) 537 WP_219947246.1 SH3 domain-containing protein -
  NXY85_RS20970 - 4173100..4173447 (+) 348 WP_258728851.1 SdpI family protein -
  NXY85_RS20975 - 4173434..4174300 (+) 867 WP_258728852.1 alpha/beta fold hydrolase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30952.20 Da        Isoelectric Point: 7.4549

>NTDB_id=721704 NXY85_RS20940 WP_004430590.1 4169255..4170046(+) (recX) [Bacillus atrophaeus strain NS2]
MPFITKITTQKKTTERFNIFLDNKYAFSVDADVLVKFDLKKGKELDDLDIVEIQYGDEVKKGFNRALEFLSYRMRSTKEV
TDHLKKKEISDPAITEIIHKLNDYRYLNDKEFAEAYASTHKKTNGKGPDVLYKELRSKGIDDDTIKETLSTFSFEEQTEE
ALKHIGKILKKEKKLSTKEIKQRAQMLLQRKGFSFDVITAALEQTEYANDEDTEREALRQHAEKALRKYRYDGSYESKMK
VKQYLFRKGFSLDMIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=721704 NXY85_RS20940 WP_004430590.1 4169255..4170046(+) (recX) [Bacillus atrophaeus strain NS2]
ATGCCGTTTATCACGAAAATCACAACGCAGAAAAAAACGACCGAGCGCTTTAACATTTTTCTCGATAATAAATATGCTTT
CAGTGTGGATGCGGACGTACTCGTCAAATTCGACCTGAAAAAAGGAAAAGAACTCGATGACCTTGATATCGTTGAGATTC
AATACGGGGATGAAGTAAAGAAAGGCTTTAACCGGGCGCTTGAATTTTTATCATACCGGATGCGCTCAACAAAAGAGGTA
ACGGATCATTTAAAAAAGAAAGAAATATCTGATCCGGCTATTACAGAAATCATCCATAAGCTGAATGATTATCGTTATCT
GAATGATAAGGAGTTCGCAGAAGCTTATGCGAGCACACATAAGAAAACAAATGGAAAGGGACCGGACGTTCTTTATAAAG
AGTTAAGGTCAAAGGGGATCGACGATGATACGATCAAAGAGACACTGAGCACATTTTCTTTTGAGGAACAGACAGAGGAG
GCGCTGAAGCATATTGGAAAAATCCTAAAAAAAGAAAAAAAACTCTCTACAAAAGAAATCAAGCAGCGAGCGCAAATGCT
TCTGCAGCGAAAGGGCTTCTCCTTCGACGTTATCACAGCGGCGCTTGAGCAGACTGAGTATGCAAACGATGAAGATACAG
AAAGGGAAGCGTTACGGCAGCACGCTGAAAAGGCGCTAAGAAAATACCGATATGACGGCTCCTACGAGAGCAAAATGAAG
GTAAAACAATATTTATTCAGAAAAGGATTCTCACTGGATATGATTGACCAATTTCTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

82.89

100

0.829