Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   NXY85_RS16330 Genome accession   NZ_CP103290
Coordinates   3203117..3204229 (+) Length   370 a.a.
NCBI ID   WP_010790564.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain NS2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3198117..3209229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NXY85_RS16305 rnpA 3198817..3199164 (-) 348 WP_258728469.1 ribonuclease P protein component -
  NXY85_RS16310 rpmH 3199324..3199458 (-) 135 WP_003178075.1 50S ribosomal protein L34 -
  NXY85_RS16315 dnaA 3200089..3201429 (+) 1341 WP_003326038.1 chromosomal replication initiator protein DnaA -
  NXY85_RS16320 dnaN 3201613..3202749 (+) 1137 WP_010790563.1 DNA polymerase III subunit beta -
  NXY85_RS16325 rlbA 3202886..3203101 (+) 216 WP_003326035.1 ribosome maturation protein RlbA -
  NXY85_RS16330 recF 3203117..3204229 (+) 1113 WP_010790564.1 DNA replication/repair protein RecF Machinery gene
  NXY85_RS16335 remB 3204247..3204492 (+) 246 WP_003326032.1 extracellular matrix regulator RemB -
  NXY85_RS16340 gyrB 3204549..3206465 (+) 1917 WP_258729873.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  NXY85_RS16345 gyrA 3206694..3209159 (+) 2466 WP_010790566.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42454.47 Da        Isoelectric Point: 7.6570

>NTDB_id=721691 NXY85_RS16330 WP_010790564.1 3203117..3204229(+) (recF) [Bacillus atrophaeus strain NS2]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQNGS
IPMQLVISKKGKKGKVNHIEQQKLSRYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLYDLSLYQKILTQR
NHFLKQLQSRKQTDQTMLDVLTEQLIETAAKVVVKRLQFTAQLEKWAQPIHSGISRGLEELTLKYQTALEVSDPEDLSKI
GDSYQRAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLHQAGMFRVQNGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=721691 NXY85_RS16330 WP_010790564.1 3203117..3204229(+) (recF) [Bacillus atrophaeus strain NS2]
TTGTATATCCAAAATTTGGAATTAACGTCTTATCGTAATTACGAGCGTGCTGAACTTCAATTTGAAAATAAAGTGAATGT
CATCATCGGTGAGAACGCTCAAGGGAAGACAAATCTCATGGAAGCGATCTATGTTTTGTCGATGGCGAAATCACATCGCA
CGTCAAATGACAAAGAACTTATACGGTGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGGTCG
ATCCCGATGCAGCTTGTCATTTCCAAGAAGGGGAAAAAGGGCAAGGTCAATCATATCGAACAGCAAAAACTGAGCCGGTA
TGTAGGAGCGCTGAATACAATTATGTTCGCGCCCGAGGACTTAAATCTCGTAAAGGGCAGCCCGCAAGTAAGACGGCGGT
TTCTTGACATGGAAATCGGCCAGGTATCTCCAGTCTATTTGTACGATCTTTCTCTGTACCAGAAAATTCTTACGCAAAGA
AATCATTTTTTGAAACAGCTGCAAAGCAGGAAACAGACTGACCAGACAATGCTCGACGTTCTGACTGAACAGCTGATCGA
GACTGCTGCAAAGGTTGTCGTAAAACGCCTGCAATTTACAGCGCAGCTTGAAAAATGGGCGCAGCCGATCCATTCGGGAA
TTTCAAGAGGGCTTGAAGAACTGACGCTGAAGTATCAGACGGCTCTTGAGGTATCAGATCCCGAAGACTTGTCGAAAATA
GGAGATAGTTACCAAAGGGCGTTTTCAAAGCTAAGAGAAAAAGAAATTGAGCGTGGTGTAACGCTGTCAGGACCTCATCG
GGATGATGTTCTTTTTTATGTGAACGGACGCGATGTGCAAACATATGGTTCTCAGGGGCAGCAGCGGACAACGGCATTGT
CACTCAAGCTGGCGGAAATTGACTTAATTCATGAAGAAATCGGAGAATACCCTATCTTACTTTTGGATGATGTGCTGAGT
GAGCTGGATGACTATCGGCAGTCGCATTTGCTTCATACGATCCAAGGCCGTGTTCAAACGTTTGTCACTACGACAAGTGT
AGATGGCATTGATCACGAAACCTTACATCAAGCAGGAATGTTCCGTGTGCAAAACGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

95.405

100

0.954