Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   NXY85_RS14510 Genome accession   NZ_CP103290
Coordinates   2842073..2843215 (+) Length   380 a.a.
NCBI ID   WP_258728305.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain NS2     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2837073..2848215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NXY85_RS14475 - 2837120..2837548 (-) 429 WP_010790235.1 DUF1934 domain-containing protein -
  NXY85_RS14480 - 2837861..2837956 (+) 96 Protein_2865 subtilosin A family bacteriocin -
  NXY85_RS21600 - 2837971..2838390 (+) 420 WP_374115483.1 hypothetical protein -
  NXY85_RS21605 - 2838464..2838925 (+) 462 WP_374115484.1 hypothetical protein -
  NXY85_RS14490 - 2838922..2839622 (+) 701 Protein_2868 bacteriocin biosynthesis protein AlbG -
  NXY85_RS14495 - 2839629..2841023 (-) 1395 WP_258728303.1 YncE family protein -
  NXY85_RS14500 - 2841045..2841221 (+) 177 WP_258728304.1 hypothetical protein -
  NXY85_RS14505 - 2841306..2841860 (+) 555 WP_088118182.1 YdhK family protein -
  NXY85_RS14510 rapF 2842073..2843215 (+) 1143 WP_258728305.1 tetratricopeptide repeat protein Regulator
  NXY85_RS14515 - 2843199..2843318 (+) 120 WP_258728306.1 PhrC/PhrF family phosphatase-inhibitory pheromone -
  NXY85_RS14520 - 2843417..2843872 (+) 456 WP_258728307.1 YbaK/EbsC family protein -
  NXY85_RS14525 speB 2843914..2844786 (-) 873 WP_212063951.1 agmatinase -
  NXY85_RS14530 speE 2844847..2845677 (-) 831 WP_003326486.1 spermidine synthase -
  NXY85_RS14535 - 2845882..2847957 (+) 2076 WP_258728308.1 transglycosylase domain-containing protein -
  NXY85_RS14540 - 2848012..2848167 (-) 156 WP_258728309.1 hypothetical protein -

Sequence

Protein


Download         Length: 380 a.a.        Molecular weight: 45527.30 Da        Isoelectric Point: 5.1491

>NTDB_id=721687 NXY85_RS14510 WP_258728305.1 2842073..2843215(+) (rapF) [Bacillus atrophaeus strain NS2]
MTGVISSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDIYLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRL
SDLLLEIDKKQARLTGLLEYYFNFFRGMYELDHREYILAIQFFKKAESKLTFVKDKIDKAEFFFKMSEVYYYMKQTYVSM
DYARQAFEIYNEQTTYGIRMIQCQSLFGANFLDLKQYDKAIAHFQKAYTLAEAEQQPQLMGRTLYNIALCKQNQHSFESA
IEYVKKSIHVFEKSKMLPSLPQAFFLITQIYFKLGKVDNACEYHKKGREYSIAAGDTVYLMEFEFLESLYLSGPDEEAIK
KCFVFLESKMMYADIEDFALDVAKYYHQQECYKKASTYFLKVEEARQHIQGGVNLYEMEV

Nucleotide


Download         Length: 1143 bp        

>NTDB_id=721687 NXY85_RS14510 WP_258728305.1 2842073..2843215(+) (rapF) [Bacillus atrophaeus strain NS2]
GTGACAGGCGTCATATCTTCTTCCATTGGAGAAAAGATTAATGAATGGTACATGTACATACGCCGATTCAGCATACCGGA
TGCGGAATATTTACGAAGAGAAATCAAACAAGAACTGGATCAAATGGAAGAAGACCAAGATATTTATTTGTATTATTCAC
TGATGGAATTCCGGCACAATCTGATGCTTGAGTATCTAGAACCGTTAGAAAAAATGCGGATAGAGGAACAGCCGCGACTG
TCCGATTTGCTGCTTGAAATCGATAAAAAACAGGCTCGTTTAACCGGACTGCTTGAATACTATTTTAATTTCTTCAGAGG
TATGTATGAGCTGGACCACCGCGAATATATATTAGCCATTCAATTTTTTAAAAAAGCAGAGAGCAAACTGACTTTTGTTA
AAGATAAAATTGATAAAGCTGAATTCTTTTTCAAAATGTCAGAAGTTTATTACTATATGAAGCAAACTTATGTGTCTATG
GACTATGCACGTCAAGCCTTTGAAATATACAATGAACAAACTACATATGGTATCAGAATGATTCAATGCCAGTCCCTGTT
TGGAGCTAACTTTTTGGACCTGAAACAGTATGATAAAGCAATTGCTCATTTCCAAAAAGCTTATACACTTGCTGAGGCAG
AACAGCAGCCGCAACTAATGGGAAGAACGCTTTATAATATTGCCCTTTGCAAGCAAAACCAACACAGCTTTGAATCAGCG
ATAGAGTATGTAAAAAAATCTATTCATGTATTTGAAAAATCTAAAATGCTTCCTTCACTGCCACAAGCCTTTTTCCTAAT
TACACAAATTTATTTTAAATTAGGTAAGGTTGATAACGCTTGTGAATATCATAAAAAAGGAAGAGAATATTCAATAGCTG
CCGGAGACACTGTGTATTTAATGGAGTTTGAATTTTTGGAATCTTTATACTTGTCTGGACCTGATGAAGAAGCAATCAAA
AAATGTTTTGTTTTCCTTGAAAGTAAAATGATGTATGCTGATATTGAAGACTTTGCACTCGATGTTGCTAAGTATTATCA
TCAGCAGGAATGTTATAAAAAAGCATCTACTTACTTTTTAAAGGTTGAAGAAGCAAGACAGCACATTCAAGGGGGGGTGA
ATTTATATGAAATGGAAGTATAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(188-251)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-64)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

79.528

100

0.797
  rapC Bacillus subtilis subsp. subtilis str. 168

56.842

100

0.568