Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   NXY85_RS09625 Genome accession   NZ_CP103290
Coordinates   1849506..1850252 (-) Length   248 a.a.
NCBI ID   WP_258729691.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain NS2     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1844506..1855252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NXY85_RS09595 - 1844823..1845257 (+) 435 WP_258729687.1 helix-turn-helix domain-containing protein -
  NXY85_RS09600 - 1845271..1845717 (+) 447 WP_258729688.1 ImmA/IrrE family metallo-endopeptidase -
  NXY85_RS09605 - 1845767..1847185 (+) 1419 WP_258729841.1 recombinase family protein -
  NXY85_RS09610 radC 1847198..1847605 (-) 408 Protein_1916 DNA repair protein RadC -
  NXY85_RS09615 - 1847640..1848209 (-) 570 WP_258729689.1 nucleoside triphosphate pyrophosphatase -
  NXY85_RS09620 - 1848356..1849372 (-) 1017 WP_258729690.1 SPOR domain-containing protein -
  NXY85_RS09625 comC 1849506..1850252 (-) 747 WP_258729691.1 A24 family peptidase Machinery gene
  NXY85_RS09630 - 1850406..1851701 (-) 1296 WP_258729692.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  NXY85_RS09635 valS 1851759..1854401 (-) 2643 WP_258729693.1 valine--tRNA ligase -
  NXY85_RS09640 - 1854848..1855039 (+) 192 WP_003325232.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26895.64 Da        Isoelectric Point: 9.1073

>NTDB_id=721671 NXY85_RS09625 WP_258729691.1 1849506..1850252(-) (comC) [Bacillus atrophaeus strain NS2]
MVFVMFILGLIFGSFFYAAGCRIPLQISIIKPRSFCSFCRHPLSYAELIPVFSFFLQKGRCKSCAQKLSLMYPAAELWTA
GLFTAAYLRFGLSGELFVALLLISLLSIIVASDIHYMLIPDSVLMFFLPFLIAGRMIVPLPAWYDSLSGATAGFFMLVLI
AVLSKGGIGGGDIKLFAVLGIALGVKMLIAAFVLAVFIGMLYGACGTLSGKLDRKQPIPFAPAIAAGSLVSYLYGEEILS
LYVKIAMY

Nucleotide


Download         Length: 747 bp        

>NTDB_id=721671 NXY85_RS09625 WP_258729691.1 1849506..1850252(-) (comC) [Bacillus atrophaeus strain NS2]
ATGGTTTTTGTCATGTTTATCCTCGGTCTCATCTTCGGGTCCTTTTTCTATGCGGCAGGCTGCCGTATCCCCTTACAAAT
CTCTATTATAAAACCGCGCTCCTTCTGTTCATTCTGCCGCCATCCGTTGTCTTATGCTGAATTAATCCCGGTTTTCTCTT
TCTTTCTGCAAAAAGGCAGATGTAAAAGCTGTGCACAAAAACTGTCGCTGATGTATCCGGCCGCAGAGCTTTGGACAGCG
GGTTTGTTTACGGCAGCTTATCTGCGTTTCGGTTTATCCGGGGAACTTTTTGTCGCGCTGCTGCTCATATCCTTGCTGAG
CATTATCGTGGCATCAGATATTCACTATATGCTGATCCCTGACAGCGTGCTGATGTTTTTTCTCCCTTTTTTGATAGCAG
GAAGAATGATTGTACCGCTTCCTGCTTGGTATGATAGTTTATCAGGAGCCACAGCCGGTTTTTTCATGCTGGTCTTGATT
GCCGTACTCAGTAAAGGAGGAATCGGGGGCGGCGATATTAAGCTATTTGCCGTTTTGGGTATCGCGCTTGGTGTTAAAAT
GCTGATCGCAGCCTTTGTCCTTGCTGTCTTTATAGGTATGCTGTACGGCGCATGCGGCACGCTGTCAGGAAAGCTCGATC
GAAAACAGCCGATCCCCTTCGCCCCTGCGATAGCTGCCGGAAGCTTGGTAAGTTATTTGTACGGTGAAGAAATATTATCA
CTCTATGTCAAAATCGCCATGTACTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

61.538

99.597

0.613