Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   PVK49_RS07790 Genome accession   NZ_CP118306
Coordinates   1558161..1558640 (-) Length   159 a.a.
NCBI ID   WP_324293905.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 20154608     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1553161..1563640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVK49_RS07770 (PVK49_07750) - 1553321..1553926 (-) 606 WP_002982799.1 response regulator transcription factor -
  PVK49_RS07775 (PVK49_07755) - 1553907..1555469 (-) 1563 WP_047235972.1 ATP-binding protein -
  PVK49_RS07780 (PVK49_07760) - 1555509..1557425 (-) 1917 WP_047235973.1 FtsX-like permease family protein -
  PVK49_RS07785 (PVK49_07765) - 1557427..1558164 (-) 738 WP_047235974.1 ABC transporter ATP-binding protein -
  PVK49_RS07790 (PVK49_07770) comA/nlmT 1558161..1558640 (-) 480 WP_324293905.1 ATP-binding cassette domain-containing protein Regulator
  PVK49_RS07795 (PVK49_07775) - 1558696..1560321 (-) 1626 WP_047235976.1 DUF4135 domain-containing protein -
  PVK49_RS07800 (PVK49_07780) - 1560405..1560560 (-) 156 WP_038432550.1 type A2 lanthipeptide -
  PVK49_RS07805 (PVK49_07785) lacG 1561065..1562471 (-) 1407 WP_047235977.1 6-phospho-beta-galactosidase -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 18375.99 Da        Isoelectric Point: 6.3326

>NTDB_id=721671 PVK49_RS07790 WP_324293905.1 1558161..1558640(-) (comA/nlmT) [Streptococcus pyogenes strain 20154608]
MFDGDVMYNISLGRESVSGEQVIETCKRVSIYDDIISMPMKFHTPLFRDNPSLSGGQKQRISLARELVTTPRILVLDEPT
SALDVKTERIIQKNVEALHCTRVLVTHRLNTVEKADKILIMDNGKIIDYGSHHCLYKNNEYYRDLYDSYMNNYQEEGIK

Nucleotide


Download         Length: 480 bp        

>NTDB_id=721671 PVK49_RS07790 WP_324293905.1 1558161..1558640(-) (comA/nlmT) [Streptococcus pyogenes strain 20154608]
ATATTCGATGGGGATGTGATGTATAATATTTCGCTAGGGAGAGAATCTGTTTCAGGAGAACAGGTTATTGAAACTTGTAA
AAGGGTATCAATATATGACGATATCATAAGTATGCCAATGAAGTTTCATACTCCACTTTTTCGAGATAATCCATCACTAT
CTGGGGGGCAAAAACAACGAATTTCTTTAGCAAGAGAACTTGTAACTACCCCTAGAATCTTAGTTCTTGACGAACCGACA
TCAGCTTTAGATGTAAAAACTGAAAGAATAATCCAAAAAAATGTTGAGGCTTTACATTGTACGAGGGTTTTGGTTACCCA
TAGACTTAATACAGTTGAAAAAGCTGATAAGATTTTAATAATGGATAATGGCAAAATTATTGACTATGGTAGTCATCATT
GTTTATATAAAAATAATGAGTACTATCGTGATTTATATGATTCGTACATGAACAACTATCAGGAGGAAGGGATAAAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(36-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

40.268

93.711

0.377
  rcrQ Streptococcus mutans UA159

39.333

94.34

0.371