Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   NXY85_RS07885 Genome accession   NZ_CP103290
Coordinates   1577797..1578420 (-) Length   207 a.a.
NCBI ID   WP_258729536.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain NS2     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1572797..1583420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NXY85_RS07855 rpsT 1573091..1573357 (+) 267 WP_003325396.1 30S ribosomal protein S20 -
  NXY85_RS07860 holA 1573372..1574415 (-) 1044 WP_258729534.1 DNA polymerase III subunit delta -
  NXY85_RS07865 - 1574455..1574604 (-) 150 WP_181279838.1 hypothetical protein -
  NXY85_RS07870 - 1574645..1574779 (+) 135 WP_003229983.1 YqzM family protein -
  NXY85_RS07875 comEC 1574820..1577153 (-) 2334 WP_258729535.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NXY85_RS07880 - 1577160..1577729 (-) 570 WP_003325392.1 ComE operon protein 2 -
  NXY85_RS07885 comEA 1577797..1578420 (-) 624 WP_258729536.1 helix-hairpin-helix domain-containing protein Machinery gene
  NXY85_RS07890 comER 1578504..1579325 (+) 822 WP_258729537.1 late competence protein ComER -
  NXY85_RS07895 - 1579395..1580135 (-) 741 WP_258729538.1 bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG -
  NXY85_RS07900 rsfS 1580132..1580488 (-) 357 WP_003325387.1 ribosome silencing factor -
  NXY85_RS07905 yqeK 1580505..1581065 (-) 561 WP_010789259.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  NXY85_RS07910 - 1581055..1581624 (-) 570 WP_003325385.1 nicotinate-nucleotide adenylyltransferase -
  NXY85_RS07915 yhbY 1581636..1581926 (-) 291 WP_003325384.1 ribosome assembly RNA-binding protein YhbY -
  NXY85_RS07920 aroE 1581920..1582762 (-) 843 WP_216413429.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 21918.78 Da        Isoelectric Point: 4.6181

>NTDB_id=721666 NXY85_RS07885 WP_258729536.1 1577797..1578420(-) (comEA) [Bacillus atrophaeus strain NS2]
MNWFYQHKKIILTAGAAVIFIVILLIFPGAKKQEPVQQITASPDTAGTQVQQQESKGDADGEKIIIDIKGAVKHPGVYEL
KTGDRVSQAIEKAGGINSEADEKQVNLAELLQDGTVVYIPSEGEESLPSAAATASVQNGAGKEALVNINTASLEELQAIS
GVGPSKAEAIIAYREENGKFQAVEDITNVSGIGEKSFEKIKSAITVK

Nucleotide


Download         Length: 624 bp        

>NTDB_id=721666 NXY85_RS07885 WP_258729536.1 1577797..1578420(-) (comEA) [Bacillus atrophaeus strain NS2]
ATGAATTGGTTTTACCAGCACAAAAAAATAATCTTAACGGCAGGTGCTGCTGTCATCTTCATCGTCATCCTGCTTATTTT
TCCCGGCGCAAAGAAGCAGGAGCCTGTTCAGCAAATCACAGCGTCGCCTGACACGGCGGGCACACAAGTTCAGCAGCAAG
AATCGAAAGGTGATGCTGACGGAGAAAAAATTATCATTGATATTAAAGGCGCTGTCAAACATCCGGGTGTTTACGAATTG
AAAACGGGAGACAGAGTTTCACAGGCTATCGAAAAAGCGGGAGGCATTAATTCGGAGGCTGATGAAAAACAAGTAAATTT
AGCTGAACTCCTGCAGGACGGCACTGTCGTGTACATTCCGAGTGAGGGGGAAGAGTCGTTACCAAGCGCTGCCGCAACTG
CTTCTGTGCAAAACGGAGCAGGAAAAGAGGCTTTGGTTAATATCAATACAGCGTCATTAGAGGAACTGCAGGCTATTTCC
GGGGTCGGTCCGTCAAAAGCAGAAGCTATAATAGCTTATCGTGAAGAAAACGGAAAATTTCAAGCCGTTGAAGACATTAC
AAATGTCTCGGGGATCGGCGAAAAATCATTTGAGAAAATAAAATCAGCCATCACAGTTAAGTGA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(66-120)

Helix-hairpin-helix motif (HHH_3)

(143-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

65.7

100

0.657