Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   NXY85_RS07715 Genome accession   NZ_CP103290
Coordinates   1546142..1546909 (-) Length   255 a.a.
NCBI ID   WP_258729524.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain NS2     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1541142..1551909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NXY85_RS07695 - 1541300..1542112 (-) 813 WP_004429498.1 pyruvate, water dikinase regulatory protein -
  NXY85_RS07700 ccpN 1542138..1542776 (-) 639 WP_034718267.1 transcriptional regulator CcpN -
  NXY85_RS07705 glyS 1542924..1544963 (-) 2040 WP_258729523.1 glycine--tRNA ligase subunit beta -
  NXY85_RS07710 glyQ 1544956..1545843 (-) 888 WP_004429491.1 glycine--tRNA ligase subunit alpha -
  NXY85_RS07715 recO 1546142..1546909 (-) 768 WP_258729524.1 DNA repair protein RecO Machinery gene
  NXY85_RS07720 - 1546946..1547089 (-) 144 WP_004429487.1 YqzL family protein -
  NXY85_RS07725 era 1547246..1548151 (-) 906 WP_004429485.1 GTPase Era -
  NXY85_RS07730 - 1548132..1548542 (-) 411 WP_010789236.1 cytidine deaminase -
  NXY85_RS07735 - 1548656..1549033 (-) 378 WP_258729525.1 diacylglycerol kinase family protein -
  NXY85_RS07740 ybeY 1549014..1549487 (-) 474 WP_258729526.1 rRNA maturation RNase YbeY -
  NXY85_RS07745 - 1549488..1551623 (-) 2136 WP_004429478.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29198.88 Da        Isoelectric Point: 8.5598

>NTDB_id=721663 NXY85_RS07715 WP_258729524.1 1546142..1546909(-) (recO) [Bacillus atrophaeus strain NS2]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKTNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAFIAELVDKGTEEKKPNPYLFELILESLKRLNEGTDPDVITFIIQMKMLGVIGLYPELNHCVHCQSQDG
TFHFSVRDNGFICHRCFGKDPYKVPITPQTARLLRLFYYFDLSRLGNVSIKQETKDELKRVIDLYYEEYSGIYLKSKRFL
DQMESMKNLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=721663 NXY85_RS07715 WP_258729524.1 1546142..1546909(-) (recO) [Bacillus atrophaeus strain NS2]
ATGCTGACAAAATGTGAAGGAATTGTCCTTCGTACCAATGACTACGGCGAAACAAATAAGATTGTGACCCTGCTGACAAG
GGAGCACGGCAAAATCGGCGTAATGGCAAGAGGCGCCAAAAAAACCAACAGCCGTTTATCAGCCGTCAGCCAGCCTTTTC
TGTATGGATCGTTTTTAATGCAAAAAACGTCAGGTCTCGGGACGCTTCAGCAGGGTGAAATGATTCTCAGTATGAGAGGC
ATTAGAGAAGATTTGTTTTTGACAGCTTATGCTGCTTTTATTGCAGAACTTGTTGATAAGGGGACGGAGGAAAAGAAGCC
GAACCCGTATTTGTTTGAATTGATTCTTGAGTCTTTGAAGAGGCTTAATGAAGGAACCGACCCCGATGTCATTACCTTCA
TCATTCAAATGAAAATGCTGGGTGTAATAGGATTGTATCCTGAACTCAACCACTGTGTGCATTGTCAAAGTCAGGATGGA
ACGTTTCATTTTTCTGTCAGGGATAACGGATTTATCTGTCATCGCTGCTTTGGCAAGGACCCTTACAAAGTGCCGATTAC
GCCGCAAACGGCCAGGCTCTTGAGACTGTTTTATTACTTTGATCTTTCTAGACTCGGCAATGTATCCATAAAGCAGGAAA
CAAAGGATGAGCTAAAACGGGTCATTGACTTGTATTACGAAGAATATTCCGGAATTTATCTTAAATCAAAACGTTTTTTA
GACCAAATGGAGAGTATGAAAAATCTAATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

92.549

100

0.925