Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NXY85_RS06125 Genome accession   NZ_CP103290
Coordinates   1264093..1264701 (+) Length   202 a.a.
NCBI ID   WP_010789030.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain NS2     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1259093..1269701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NXY85_RS06085 - 1260199..1260705 (-) 507 WP_003325657.1 PTS glucose transporter subunit IIA -
  NXY85_RS06090 - 1260855..1261274 (+) 420 WP_010789024.1 Hsp20/alpha crystallin family protein -
  NXY85_RS06095 - 1261294..1261683 (-) 390 WP_094232263.1 YppG family protein -
  NXY85_RS06100 - 1261873..1262061 (+) 189 WP_035175493.1 YppF family protein -
  NXY85_RS06105 - 1262095..1262469 (-) 375 WP_003325652.1 YppE family protein -
  NXY85_RS06110 - 1262511..1262756 (-) 246 WP_258729402.1 YppD family protein -
  NXY85_RS06115 sspM 1262957..1263061 (+) 105 WP_003325650.1 acid-soluble spore protein SspM -
  NXY85_RS06120 - 1263088..1264050 (-) 963 WP_106033547.1 DUF2515 domain-containing protein -
  NXY85_RS06125 recU 1264093..1264701 (+) 609 WP_010789030.1 Holliday junction resolvase RecU Machinery gene
  NXY85_RS06130 - 1264739..1267492 (+) 2754 WP_258729403.1 PBP1A family penicillin-binding protein -
  NXY85_RS06135 - 1267584..1268075 (-) 492 WP_258729404.1 YpoC family protein -
  NXY85_RS06140 nth 1268072..1268731 (-) 660 WP_003325645.1 endonuclease III -
  NXY85_RS06145 dnaD 1268750..1269448 (-) 699 WP_258729405.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23625.92 Da        Isoelectric Point: 9.8392

>NTDB_id=721651 NXY85_RS06125 WP_010789030.1 1264093..1264701(+) (recU) [Bacillus atrophaeus strain NS2]
MIRYPNGKTFQPKKTVSSQNRQKKPLSYSNRGMTLEDDLNETNKYYLAKQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGLYKGRYIDFEAKETKNTTSFPLQNFHDHQIEHMKQVTAQDGICFVIISAFGQVYFLEAEKLFYFWERKE
KNGRKSIRKDELNEAAFPISLGYSPRIDYISIIEQLYFSPNP

Nucleotide


Download         Length: 609 bp        

>NTDB_id=721651 NXY85_RS06125 WP_010789030.1 1264093..1264701(+) (recU) [Bacillus atrophaeus strain NS2]
GTGATTCGGTATCCCAACGGAAAAACGTTTCAGCCGAAAAAAACGGTTTCATCCCAAAATAGGCAAAAGAAGCCGCTATC
ATACAGTAATCGCGGCATGACCCTCGAAGATGACTTAAATGAAACGAATAAGTATTATCTAGCAAAACAAATTGCCGTGA
TTCACAAAAAACCGACGCCCGTGCAAATTGTAAATGTCCATTATCCAAAAAGAAGCGCAGCTGTCATCAAAGAAGCCTAT
TTTAAGCAGTCATCAACAACTGACTATAATGGACTTTACAAAGGCCGGTATATTGATTTTGAAGCAAAGGAAACGAAAAA
TACAACCTCCTTCCCTTTGCAAAACTTTCATGATCACCAAATTGAGCATATGAAGCAGGTAACGGCTCAAGACGGAATTT
GTTTTGTTATTATATCCGCTTTCGGCCAAGTTTATTTTTTAGAGGCTGAAAAGCTGTTTTACTTCTGGGAAAGAAAAGAA
AAGAACGGCAGAAAGTCGATTCGGAAAGACGAATTAAATGAAGCCGCTTTTCCAATTTCACTTGGATACTCGCCAAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCAAACCCATAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.547

99.505

0.901