Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NXY85_RS02760 Genome accession   NZ_CP103290
Coordinates   513498..513776 (+) Length   92 a.a.
NCBI ID   WP_003329146.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain NS2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 508498..518776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NXY85_RS02740 - 509693..510607 (+) 915 WP_258729145.1 ketopantoate reductase family protein -
  NXY85_RS02745 - 510638..511870 (-) 1233 WP_258729146.1 aminopeptidase -
  NXY85_RS02750 - 511972..512106 (-) 135 WP_010788482.1 protein YkpC -
  NXY85_RS02755 mreBH 512208..513215 (-) 1008 WP_035175453.1 cell shape-determining protein MreBH -
  NXY85_RS02760 abrB 513498..513776 (+) 279 WP_003329146.1 transcriptional regulator AbhA Regulator
  NXY85_RS02765 - 513989..515275 (+) 1287 WP_003329145.1 ATP-binding protein -
  NXY85_RS02770 - 515287..516126 (+) 840 WP_258729147.1 gamma-glutamylcyclotransferase -
  NXY85_RS02775 ktrC 516176..516841 (+) 666 WP_010788485.1 Ktr system potassium transporter KtrC -
  NXY85_RS02780 ade 517011..518738 (+) 1728 WP_258729149.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10211.03 Da        Isoelectric Point: 6.9804

>NTDB_id=721646 NXY85_RS02760 WP_003329146.1 513498..513776(+) (abrB) [Bacillus atrophaeus strain NS2]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGVCLMTGEITTENKEYGNGKIILSPEGAQ
QLLDEIQAALKA

Nucleotide


Download         Length: 279 bp        

>NTDB_id=721646 NXY85_RS02760 WP_003329146.1 513498..513776(+) (abrB) [Bacillus atrophaeus strain NS2]
ATGAAATCAATTGGTGTTGTAAGAAAAGTAGATGAACTTGGCCGTATTGTTATGCCGATAGAATTAAGAAGAGCGTTAGA
TATTGCGATTAAAGACAGTATTGAGTTCTTTGTAGACGGAGATAAAATCGTCTTGAAAAAATATAAGCCGCACGGCGTGT
GTTTAATGACAGGGGAAATTACGACAGAAAATAAAGAATACGGCAATGGAAAAATCATTTTAAGTCCAGAAGGCGCACAG
CAGCTGCTTGACGAAATTCAAGCTGCTTTAAAAGCATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576